GgaINT0112898 @ galGal4
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178467723-178469429:-
Coord C1 exon
chr1:178469346-178469429
Coord A exon
chr1:178469062-178469345
Coord C2 exon
chr1:178467723-178469061
Length
284 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AAATCTGTTTGCTTTTACAGGTG
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACAGTCACTTTATTTATTCCTTCAGCCCAACTGCAGGCCTTAACAAGCTTTTTATCCGGCTAGCAGAAGCTCCTACAGCCAAG
Seq A exon
GTACAAAGTGCTTTCACTTGTGTATGCTCATCTGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGTGACCCTGCACATAGCAGGGGGTTGAAACTCGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTGTGATCTGCTGTGCTATAACTCCTGTCCTGTGTGCTTGCAGGTAAACATGCCACATTGTCTGTTGGATGCTCCCATTTTCATGTCAAATCTGTTTGCTTTTACAG
Seq C2 exon
GTGAAGCTGCTAATAGGAGCATACAGAGTGCAGCTGCAGTGACCTCACAGTTGCGAGCCCGTTGAGGGGACTGACACCTTTCGGATATACTTCTGATTCCTCCGTTTAGAGACTGACAAAGCAGTTTGGAACTTTTTGGCACCACACCCTTAGTCCCACAAGTTCCCATCCCCATGTTGTTTGTTGGCAGTCATACAGAAAAGTACATGTTGGAGAGCAGCCAAATATGCATTGCTGGTTGGGACAGGGTTGTCAGCTCTTTTTTGATTTGTACAGACATAGATGTAAGTATTTGTGCCAATACATACAATGCTGTCTTTCTTTAACTTGTTGAGTCCAGACTGCATATTTCAGCTTTTCCACAATGTGGAACAGTGCATATAAGAACTATTTAAGGTAATTAAGTAAAATGTCTTTTTTTTAATAGAAGGATCTTTTCCATTTGTAAACTACAATTTTCTACTTACTCAAATAACTGTAATGTTTCAGTGTAAAATGCAGGACTGTTGTATTCTCAGAGCTGTGGGCAGGAATTACACCTGAAAGTCACTGCATCGCTTAACCATGAACTGCTGGGGGCCACATTCTGGTTTGAAACTCTTCTGCAGTTGTCTCCTGGTGGGAAAGCAGGAGTGCCCTGTGGGATTCCCTTTGAACAGACAGTTCAGTCTGCAGGTGTGAATGAAGACGTCCAGATAGGCTCAATGTGTAGAGCACTGCGGTTGGATTCCTAGTTACATCAGTGCTTTAAAATTCATCTTGTGTTAGAGAAGCAACTGATAGTTATACAGACATCTTAACTTTGGAGTTGTTAGTCCAGTGGCATATGGGAAAACAAATACAAATAGCTGGAACTAGCAAACCAGAACGTGTTAACTGCTACCTTAACTGTGTGGGCATGCTTTCCTAGGCTAAAAGGTACAGAGGAGTTCAGATGTTCTCAGCCTGCCTGATGAGAACAGATACTGCCCTCTCATTCAGAAACTCAGTTCCTGTGTGCAAAGAGCTGCTATCTCTCTTTTTATGTCTTTCTTTAAGTGACCATTTTATCAGATGACAGCAGTTCTGTAATGGTTCTGTGCTGTAATATACAAATGTAATACTTCTGCCTGAAGTACAGAGTATTTTTCTTTGTAAATTAAACAACATCTTGAAAAGTAAAGGAAAAAAATAGATTGTGCCTTTGCTGTTCTGGTTGCCACAAGTAGTTTACATGACACTATGTGCCTATATTGCTTAAGAAATTACTGGGGATAAATAATGTATTTGCACCATTTTGATGGTGAGCACTCAGTTGTACCCTTTAAAGAACTGTGACTTTATATTAAAACTTTCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGCAGGCCTTAACAA
R:
CTGTCCCAACCAGCAATGCAT
Band lengths:
305-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]