BtaINT0094531 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36608008-36608775:-
Coord C1 exon
chr12:36608692-36608775
Coord A exon
chr12:36608356-36608691
Coord C2 exon
chr12:36608008-36608355
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTTTTTTTCCTTTCAACAGGTT
3' ss Score
12.84
Exon sequences
Seq C1 exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTGGCAGGCCTCAATAAAATGTTCATAAGGCTGACAGAAGCACCTTCTGCTAAG
Seq A exon
GTGAGAATCCTTTCCTTGCATCTATTGTCACTGCTCGGGTGTTCCTGCCTGGATCTGAGATGGGCTCAACCCTCTTGATGTCCATGGAACACAGCCGTAGGGGATGTTCTATACTGTGATACCTAATTTTCCACGTGTATGATCACTAGCTAGACTGAATAAGGGAGTAACCTAAAAATTCAAGTACTTGGATCTTTAATTAAAATAATGGTACTCTATCCACTACACCGATAACCAATTTGAGAGTCCTGCCAAAGAGACAGGGTTTTTTCCCCCTCTCTTCTAACTAAGGAAAACTAGAAATATATCCTGGTTTTTTTTTTTTCCTTTCAACAG
Seq C2 exon
GTTAAGTTGCTAATAGGTGCATACAGAGTACAGCTACAGTGACCAGAAAGAATTGGAAGAGTTTCTCTTAAGACCTATTTCTAAATACTCTTTGAAGCAGTTTGGAATTCTGGCACAGCTAATATTTCCAAATTTAAAGTTTCTTCTGTAAGCCTCTTGCATTGAAGGCCAGTCATCTGTTACAGTCTGTTGAGATGGGACACAGTGGGTCTAACATAAAACACAGCTGTAAGTATTTGTGCAAGTGTTCTGAGTCTCAGTGTTGTGTCCAGACTATGTTTTTCCACAATGTGGAATGGTACATATGAGGATTATTTAAGAAAATTAAAACTTTTTTTTTTTAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTACTCATTCAGCCCTGTGG
R:
CTGGACACAACACTGAGACTCA
Band lengths:
345-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development