GgaINT0112898 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183527588-183528671:-
Coord C1 exon
chr1:183528588-183528671
Coord A exon
chr1:183528304-183528587
Coord C2 exon
chr1:183527588-183528303
Length
284 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AAATCTGTTTGCTTTTACAGGTG
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACAGTCACTTTATTTATTCCTTCAGCCCAACTGCAGGCCTTAACAAGCTTTTTATCCGGCTAGCAGAAGCTCCTACAGCCAAG
Seq A exon
GTACAAAGTGCTTTCACTTGTGTATGCTCATCTGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGTGACCCTGCACATAGCAGGGGGTTGAAACTCGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTGTGATCTGCTGTGCTATAACTCCTGTCCTGTGTGCTTGCAGGTAAACATGCCACATTGTCTGTTGGATGCTCCCATTTTCATGTCAAATCTGTTTGCTTTTACAG
Seq C2 exon
GTGAAGCTGCTAATAGGAGCATACAGAGTGCAGCTGCAGTGACCTCACAGTTGCGAGCCCGTTGAGGGGACTGACACCTTTCGGATATACTTCTGATTCCTCCGTTTAGAGACTGACAAAGCAGTTTGGAACTTTTTGGCACCACACCCTTAGTCCCACAAGTTCCCATCCCCATGTTGTTTGTTGGCAGTCATACAGAAAAGTACATGTTGGAGAGCAGCCAAATATGCATTGCTGGTTGGGACAGGGTTGTCAGCTCTTTTTTGATTTGTACAGACATAGATGTAAGTATTTGTGCCAATACATACAATGCTGTCTTTCTTTAACTTGTTGAGTCCAGACTGCATATTTCAGCTTTTCCACAATGTGGAACAGTGCATATAAGAACTATTTAAGGTAATTAAGTAAAATGTCTTTTTTTTAATAGAAGGATCTTTTCCATTTGTAAACTACAATTTTCTACTTACTCAAATAACTGTAATGTTTCAGTGTAAAATGCAGGACTGTTGTATTCTCAGAGCTGTGGGCAGGAATTACACCTGAAAGTCACTGCATCGCTTAACCATGAACTGCTGGGGGCCACATTCTGGTTTGAAACTCTTCTGCAGTTGTCTCCTGGTGGGAAAGCAGGAGTGCCCTGTGGGATTCCCTTTGAACAGACAGTTCAGTCTGCAGGTGTGAATGAAGACGTCCAGATAGGCTCAATGTGTAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGCAGGCCTTAACAA
R:
CTGTCCCAACCAGCAATGCAT
Band lengths:
305-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]