GgaEX0025513 @ galGal3
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183527588-183529508:-
Coord C1 exon
chr1:183529381-183529508
Coord A exon
chr1:183528588-183528671
Coord C2 exon
chr1:183527588-183528303
Length
84 bp
Sequences
Splice sites
3' ss Seq
CAATTCTCTTTTCCTTTTAGGAC
3' ss Score
11.44
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
Seq A exon
GACAGTCACTTTATTTATTCCTTCAGCCCAACTGCAGGCCTTAACAAGCTTTTTATCCGGCTAGCAGAAGCTCCTACAGCCAAG
Seq C2 exon
GTGAAGCTGCTAATAGGAGCATACAGAGTGCAGCTGCAGTGACCTCACAGTTGCGAGCCCGTTGAGGGGACTGACACCTTTCGGATATACTTCTGATTCCTCCGTTTAGAGACTGACAAAGCAGTTTGGAACTTTTTGGCACCACACCCTTAGTCCCACAAGTTCCCATCCCCATGTTGTTTGTTGGCAGTCATACAGAAAAGTACATGTTGGAGAGCAGCCAAATATGCATTGCTGGTTGGGACAGGGTTGTCAGCTCTTTTTTGATTTGTACAGACATAGATGTAAGTATTTGTGCCAATACATACAATGCTGTCTTTCTTTAACTTGTTGAGTCCAGACTGCATATTTCAGCTTTTCCACAATGTGGAACAGTGCATATAAGAACTATTTAAGGTAATTAAGTAAAATGTCTTTTTTTTAATAGAAGGATCTTTTCCATTTGTAAACTACAATTTTCTACTTACTCAAATAACTGTAATGTTTCAGTGTAAAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'20-24,'20-22,21-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAATTCCAGCTCCCTGT
R:
AGGGTGTGGTGCCAAAAAGTT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]