DreEX0047132 @ danRer10
Exon Skipping
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21651594-21657862:-
Coord C1 exon
chr9:21657738-21657862
Coord A exon
chr9:21657553-21657636
Coord C2 exon
chr9:21651594-21652738
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCGTGCTGCTCTCCCTGCAGGAC
3' ss Score
11.85
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTTCTGGAATCCTACTCTTTATCTTCCATGCAAACTTCCTCAATGAAATCACAGCTAGACTCTGCGGGCCCTGTAGTGTTCATGCTGTGGTACTGAATGACAAATTTCAGCTGCCCATCTTCTTG
Seq A exon
GACAGCCATTTCATTTACTCTTTCAGCCCTGTTCAAGGAGCCAACAAAATGTTCATCCGTCTGGCAGAGTCCCCCACAGCTAAG
Seq C2 exon
GTGAAACTCCTCATTTGTGCGTACAGAGTCCAGCTACAGTGAAGTCAGAGGGTCACTGCAGGAGCTCGTCCTCTCCAAAAACTGAGACTTTTCCTACACCTGCTGAACATGAGATTCTTTAGGAATGGTTTAGTTTTACTTGTGTGGAATAAACTGAAAGACAGTAATACTAACAGGTCAATGACAACAGTCACAGTTCTCAGCGTGACTTATAAGTTCTTGTTTAGCTAAGTGTTGCAACCAGTTTCCAGAGGTCCGATTTTTGTGAATTGAAACTGCATCACCCTCGAGGTCAGCATGAAATATGATAAATTCGGGCTTGCGTCTGAAGGTCATTTGTAAATCTTGTTTGTATAGTGTTCCTTTTATTTCATTTCTTTTTAAATAGAATAATTTATCACTCCAGATTCTCACCCACTGTTTCGTTTTATGTTCGGTGTGTTTAACCAGACAGCGCACTTGTCTGATGTGTGCAGAATGAATGAAAGAATGAGCAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576-'16-19,'16-15,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGTAGTGTTCATGCTG
R:
TCTCATGTTCAGCAGGTGTAGGA
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]