BtaEX6056676 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36608008-36609720:-
Coord C1 exon
chr12:36609593-36609720
Coord A exon
chr12:36608692-36608775
Coord C2 exon
chr12:36608008-36608355
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCATTTGCTCTCTTCCCCAGGAC
3' ss Score
12.13
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTCTGGCGTCCTGCTGTTTATCTTCCATGCAAACTTTCTGGGTAAAGAGGTCATTGCTCGCCTCTGTGGACCATGTAGTGTACAAGCTGTTGTTTTAAATGATAAATTTCAACTTCCTGTTTTTCTG
Seq A exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTGGCAGGCCTCAATAAAATGTTCATAAGGCTGACAGAAGCACCTTCTGCTAAG
Seq C2 exon
GTTAAGTTGCTAATAGGTGCATACAGAGTACAGCTACAGTGACCAGAAAGAATTGGAAGAGTTTCTCTTAAGACCTATTTCTAAATACTCTTTGAAGCAGTTTGGAATTCTGGCACAGCTAATATTTCCAAATTTAAAGTTTCTTCTGTAAGCCTCTTGCATTGAAGGCCAGTCATCTGTTACAGTCTGTTGAGATGGGACACAGTGGGTCTAACATAAAACACAGCTGTAAGTATTTGTGCAAGTGTTCTGAGTCTCAGTGTTGTGTCCAGACTATGTTTTTCCACAATGTGGAATGGTACATATGAGGATTATTTAAGAAAATTAAAACTTTTTTTTTTTAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922-'21-27,'21-25,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGTCCTGCTGTTTATCT
R:
TGGTCACTGTAGCTGTACTCTGT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]