MmuEX0029503 @ mm10
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56693424-56697430:+
Coord C1 exon
chr14:56693424-56693578
Coord A exon
chr14:56696659-56696742
Coord C2 exon
chr14:56697131-56697430
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCTTTCCCCTCTAGGAC
3' ss Score
14.3
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
ACTTTCCAGAGTTGCAGAAGAAACAATCAGGGATTACTTTGAATCTCGCCTTGCTCTACTGGAACCTGTTTTCCCAATAGCATGCCATCGGCTCTGTGAGGGGCCGGATTTCTCAACAGATTTCAATTACATGCCCCCTCAGAACATGCCTGAAG
Seq A exon
GACAGTCACTTTGTTTATTCATTCAGTCCTGTTGCTGGCCCCAATAAGTTGTTTATAAGGTTGACGGAAGCACCCTTTGCCAAG
Seq C2 exon
GTTAAGTTGCTAATAGGTGCATACAGAGTACAGCTGCAGTGACCACAAAGGATGGAGAACCGGCCTCTTTTCAGCTGGATTCCAAGGACCATCCCTGTAGCAGTTTGGAATTCTGGTGCAGCTCAAATGTTCCTACCTAGTTGTAAACTTAAAATTTAAGCCTGCTGCCTGTTCAGGTTTGTCTACATATATTTGTGCCATTGGTCGAAAACGTTCAATGTTCTGCTTAGTTTATTTCCACAATGTGGAACAGTACGTGTAAGAAATATTTAAGGAAATTAAAAACCTTTTGAATTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000116468fB12983
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCCTTGCTCTACTGGAA
R:
CCGGTTCTCCATCCTTTGTGG
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types