GgaEX1046747 @ galGal4
Exon Skipping
Gene
ENSGALG00000017142 | PSPC1
Description
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZK88]
Coordinates
chr1:178416774-178482435:+
Coord C1 exon
chr1:178416774-178416882
Coord A exon
chr1:178465643-178465768
Coord C2 exon
chr1:178471010-178482435
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTATTCTTTATGCTTGCAGACA
3' ss Score
7.6
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACATGAAGAAGAGCATAGACGCCGTGAAGAGGAGATGCTACGCCAGAGGGAACAGGAGGAATTGAGACGGCAGCAGGAGGGAGGATTTAAGCCAAATTTCATGGACAAT
Seq A exon
ACAGGACCAGTAGCCCTGCAAGACCAGCGGGCAGTGATGGGAAATTTACCAACACAGGAATGGGAAGAAGATACATCAGAAAAACAGCTGTTGGCATCTCCTTGCATAGGAAAATCCAAATTGCAG
Seq C2 exon
TACAAACAAGCAGAAGCCAACACAGCAAGACCCCTACCTTCTGGCACATTCTGTGGGGGTTTATAGTTGAAGTCTGTGGAGAAGTCTGGCCCTTCGCAGAGACGGTGACAAGCAATTGGGAAGACTGGCTCCAGCAAAACAAGGCGAGCTTCAAAATAGTCCCTGATGGTATCTTCTGCTACTCTTGAGAGTCTACATGAGGAAACAAGCAAGGCCTGTACTTCACACTATCATTACTTCAGCAGACAGTCTTGAAGAGAGATTATACAAAGAACGATTCTAGATTTCCTTTTCGCCTTCCCAGTTGTCAGGACTTCATCACCTACATTTATGCACAGATGAGCCCCAGGTCCCAACATTTTGTTAATAAAACATTTTAACATTTTATCGGAGACCTGTTTGTGAAATTCCATCTGTCAGGTCTCAGCATTTTACTTTTGTGGACAAGAACACTACAGCAGACACCAGAAGTCTCAGTAACCACATACTTCTTTATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017142_MULTIEX1-6/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATAGACGCCGTGAAGAG
R:
GAAGCTCGCCTTGTTTTGCTG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]