GgaEX0025508 @ galGal4
Exon Skipping
Gene
ENSGALG00000017142 | PSPC1
Description
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZK88]
Coordinates
chr1:178416774-178461917:+
Coord C1 exon
chr1:178416774-178416882
Coord A exon
chr1:178435123-178435180
Coord C2 exon
chr1:178461814-178461917
Length
58 bp
Sequences
Splice sites
3' ss Seq
AAAATTATGTTTACTTACAGAGA
3' ss Score
6.22
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACATGAAGAAGAGCATAGACGCCGTGAAGAGGAGATGCTACGCCAGAGGGAACAGGAGGAATTGAGACGGCAGCAGGAGGGAGGATTTAAGCCAAATTTCATGGACAAT
Seq A exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCTCGTGGAGCAATTAACATGGGAG
Seq C2 exon
GTTACTGTTAAAATGTTAAAATGCTGATGAAGACGGGCTTCTGTAGAATCCTGCTGCTGCCTTATGAATACAAAAGGGAATCCTAAACCAAGCTTTAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017142_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSGALT00000036438fB11051
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGAGATGCTACGCCA
R:
GGCAGCAGCAGGATTCTACAG
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]