MmuEX0037602 @ mm10
Exon Skipping
Gene
ENSMUSG00000021938 | Pspc1
Description
paraspeckle protein 1 [Source:MGI Symbol;Acc:MGI:1913895]
Coordinates
chr14:56725306-56748943:-
Coord C1 exon
chr14:56748835-56748943
Coord A exon
chr14:56728520-56728577
Coord C2 exon
chr14:56725306-56725475
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACAACTATGTTTACTTACAGAGA
3' ss Score
6.61
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCACAGAGAGCAGGAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAACCAAACTATATGGAAAAT
Seq A exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG
Seq C2 exon
ATGCATTTAGCCCAGCACCTGCTGGTACCCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAATGGCGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021938_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGGGCGGCTTTAAACCA
R:
CCATTGGTGGGCCAGGTATAG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types