RnoEX0070796 @ rn6
Exon Skipping
Gene
ENSRNOG00000020782 | Pspc1
Description
paraspeckle component 1 [Source:RGD Symbol;Acc:1310122]
Coordinates
chr15:36950257-36997120:-
Coord C1 exon
chr15:36997015-36997120
Coord A exon
chr15:36976228-36976285
Coord C2 exon
chr15:36950257-36950467
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACAACTATGTTTACTTACAGAGA
3' ss Score
6.61
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACATGAAGAGGAACATCGTCGTCGTGAAGAAGAAATGATCAGACACAGAGAACAGGAGGAACTGAGGCGACAGCAGGAGGGCTTTAAACCAAACTATATGGAAAAT
Seq A exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG
Seq C2 exon
GTTGTTACAACATGAATCTACTGAAGACCCTGGTCTGTTGGAGAAGAACTTAACAGCCCAGAATGCTGGCCTTAGACTGCTGCATTAGGTCCTTTGGGTCTCCTACTTTAGAAAGGAAGCTGCTGCTGCTGCTTACAATTCTGGATGCTCCAGTTCGGATTGGCTCACTACACTTGCCATAGGTAATAGTCCCAGTGTCGTCGTTTGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020782_MULTIEX1-2/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGCAGGAGGGCTTTAAA
R:
ACCCAAAGGACCTAATGCAGC
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]