RnoINT0119455 @ rn6
Intron Retention
Gene
ENSRNOG00000020782 | Pspc1
Description
paraspeckle component 1 [Source:RGD Symbol;Acc:1310122]
Coordinates
chr15:36970148-36972835:-
Coord C1 exon
chr15:36972666-36972835
Coord A exon
chr15:36970636-36972665
Coord C2 exon
chr15:36970148-36970635
Length
2030 bp
Sequences
Splice sites
5' ss Seq
GTGGTAACG
5' ss Score
4.76
3' ss Seq
TTTGTTATATGTCATGATAGCAC
3' ss Score
3.94
Exon sequences
Seq C1 exon
ATGCATTTAGCCCAGCACCTGCTGGTACCCAAGGGCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAATGGCGCAGTG
Seq A exon
GTAACGTATCACTAAAACTTTTTTGATTATATTTTGTCACTAAGCATTTTGCTGCCTCAAAGATAACTTCACACTTAATAAAACTTGGTGTCATCACTTTTGATATTATGGATGTACAACCATTGACGAGAACGCAACTTTGTTACATTTTAATTAATTTGGGACAATTATAAGTGGCCAGATGTTTTCTTAGTATCGCCATCACTTCTTCCTCAATAGAGAGCAAGTCCATGGGCCGCTACAGGTATTTTGCAGTGCTTTTAACTCATGTCTGCCTTTGGATGGATGGATGCAAGGCTAAATGTTATTATTGCGCTTTTCCTGTGCAGACTATTTACCTTTAGAAACAAACTCTACTGTGTATGAAAAAACAAGTTTTAGTTTTGGTGCATCATGTTGTAATGATTTATTTCAAACCATTTCTCTTTGTTGAAAAAAGTTAACATTAGAATTTTATTTAACATTTTTAAAGGTCTACTGTTATACTGTCTCAATAGGATTATTAATTGCTTTTATTACTAAATTTAAAATATAGATTTTTGATCGAAGAGTGTGAAGATACCTTTGTGGGTAAAAACATAAAAATTAATTTTCTTTGTTGTAATTTTTATCATCTTTACATACCAGTTAGCAGGACAAATGACTCTTAACCACCTCTGTCTGAAGTTTTCTAGTAGAAAATCATTTCTTCCTCAAGTGATGCTTCTTTAAAGTTCCGAAAAAAAAAAAAATAGGTGACCAGATTTCAAAAAAGCTGTTTGGCTTTGAGATTACAGCACTGCGGTTTGCAGTCCTTGCTGGGTAAGAAGGAAAATGCACTGGCAGTCGTTAATCTGGGCCATCGCATGCATCTGTGGTGACCAGGAAGAGATGAAGAGGAAGGCATTGTGCAGTGTAGGACTGAAGAATACACGATCTTTCTTGATATCATTTTCAGATCCATTGTTGAGGGAGGTAAAGAGACAGGGTCACAGTATCCAGGACAGAAAGACGGCACACAGAGTGGTCAGTGCCTCTGTCCCTGATGAGGGGCAGCATTTATATAGTGCAATCCCTGGAACTTGAAGTTTTGCTCTGTTCAACACCTAATCATTAGCAGTAACATAGACACAATTGGCTATATTCCTACACACTTTTCTAAAATTGGAAAATTAATTTCAATGACATTTTAAAGTTTTGGGGTTTTTTTTTCTTTTTTTGTCTTTTTTTTTTCATTTTCACTTAAAAATTATCTTCTTCACTTAAGATTAACCTTTGTAAAATTTCACAGAATAAATGACTCAGATATTTAATGTGCTTTAATTAATTATTCATGTTATTAAACAATTCTTAAAACTTCTCTTCTTAACACTAGTCTTTAAAGGAAAGCACTTCATGTGTCTCGATGTTAGAGTCCCTGGGCTTCGTGTTGTTAATGATACATTTCTTAATGCTTGTTTCTTAGAAGCACTGATAATTGAGTTTCTAGAATGTTTCCTTCTGAAAACAGTATGGTGCTGCTCCTCAGTTATACATCTCTGATTTCTTTTTAAAAAGTTCCCTTCTCACCAGGCCTGGTGAGACATGTTTATATATAGTCCCCCCACCTGGGAGGCAAAAGCCAAGGCAGGAGAACCCTGAGGTACAGGCCAGCCTGGGCTACATAAGACTATCTTGAAGCAACATGACAATACTCTTTTCTTTACCTCATAGTTTCATGTCGTGTGAACTTTTTCAAAAGGGATCAGAGTAGTGTTGTACACTGATTGGGCATAAGGAGGCACTTGCTTATGTCAGAATCAGCTCTTTCCATGACACGGAGCACAGCGTTTGCAATGGTGCTCTGCACGTGCTGCTTAGTGTTAGTGTTATTGTTGTGATTGTTGAAACAGGAACTAATTAACCTGCTCCTTTCTTCCTTCTATGTTTGATGCTGACTCTGCTGGACTTTCTGCTGAACTTCCTGACACCACCACTTGGGATTTTGCCAATTTTTCTTGTCACTTTTATTTTGGCGTGTTCCAAATGGACTTTGTTATATGTCATGATAG
Seq C2 exon
CACAATGATAGGTTTCCCCAAGGTCCTCCATCCCAAATGGGTTCGCCTATGGGAAACAGAACAGGTTCTGAAACCCCCCAGGCACCAATGAGTGCTGTAGGGCCTGTGAGTGGTGGTCCTGGTGGCTTTGGCAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCTAATAAGCGTCGGAGATATTAAAATTCTTTCATTCCTGGCTGTTTAGAAAAAAATTCAATGACTTTACACCTTGTCTGTTACGCGGGAGAAATGGTTTTATTGTTAATGTATGTAGACTGAAGTTTTTCTTTTGTAAAACGGGGTTTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGCTTAGTGGAAAAGATGCCCATCATTGTGAATGTTGAAATGTGTTTGTGACCTTAGCTATGGATAGCTATGTGGCATTATTATTAAATCTATGTAGTTACTTAATCTCAATAAAGAAACGATTTTGCCTAATTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020782:ENSRNOT00000028219:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]