MmuINT0128253 @ mm10
Intron Retention
Gene
ENSMUSG00000021938 | Pspc1
Description
paraspeckle protein 1 [Source:MGI Symbol;Acc:MGI:1913895]
Coordinates
chr14:56722441-56725475:-
Coord C1 exon
chr14:56725306-56725475
Coord A exon
chr14:56723281-56725305
Coord C2 exon
chr14:56722441-56723280
Length
2025 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATG
5' ss Score
4.46
3' ss Seq
TTTATTATATGTGATTATAGCAC
3' ss Score
3.63
Exon sequences
Seq C1 exon
ATGCATTTAGCCCAGCACCTGCTGGTACCCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAATGGCGCAGTG
Seq A exon
GTAATGTATCACTAAAATTTTTTTGGTTATATTTTGTAAATAAGCATTTTGCTGCCTCAAAGATAACTTCACACTTAATATAACGTGGTGTCATTTCCTTTGGTAGTATGGATGTACAGCCAGTGAAGAGAAAGCAACTTTGTTAAATTTCAATTTATTAGAGACAATTTTAAAGTGTCTTAGTATTGCCATCCCCACTTATTCTTCTTCCTCAATAGAGCGCACGTCTCACTACAGTTCTCTGCAGTGCGTTTAACTCCTGTCTGCCAGTGAATGGATGCAAGGCTAAATGTTTATGATTGCGCTTTTTCTGTGTAGACTCTTTACCCTTAGAAACAGAACTCTACTGTGTGTGGAAAAAACCAAGTTTTAGTTTTGACACATCTCCTTGTAATAATTTATTTCAAAACATTTCTCTTTGTTGACAAAAAGTTAAGATTAAAATTTTAGTTTTTCAAAACATTTTAAAGGTTTGCAGTTATATGCTCTTAATGTGACTGCTGATGGCTTTTATTACTAAATTTAATATGTACAGACTTTTGATCCAGGAGTGTGAAGATACCTTTGTGTGGCTAAAACGTAAAAATTGATTTTCTCTGTTGTAATGTCTATCATCTTTACACACCAGTTAGCTGGACAGATGGCTCTCACCACCTCTGTCTGAAGTTTTCTAGAAATCATTTCTTCCTCAGGTGATGATTCCTTAAAGTTCTGAAAAAGAAAATTGGTGACCAGATTTCACAAAGGCTGTTTGGTTTTGGGATTACCGTCCTAAAAGTTAGCAGTCTACCACTGGCTAAGGAGGAAATGCACTGGCAGTTAATGTAGACGGGCCATCCCTTTTACATCCATTGGGATCAGAGAGAGATTAAAAGGAAGGCATCGTTCATTGTAGAACTGAAGAGTAATACACTGGTCTTCTTGATATCATTTTCAAATCTATTGTTTAAGGAGGTAGAGAGGCAGGGTCACAGTATCCAGGACAGAGAGATGGCACATAAAGTGGTCAGTGCGTTTGTCCCTTTAAGAGAGGCAGCATTTATATAGTGTAATCCCTGAAACTTGAAGTATGTTGGTTCAATTTCTCTTCTGCATTTAATCATTAGCAGTAACATAGACATTATTGGCTGTATTCCTATACACTTTCCTAAAATTGTAAATTTAATTTAAATGTCATTCTTAGGTTTTGTGGTTTTTTTTGTTTGTTTTTCTTATTTATACATTTATACTTCTTAAGATTGACCTTTGTAAAGTTTCAAAGAATAAATGACTCAGATATTTAATGTGCTTTTAGTTATTCATATTATTAAAACAGTTCTTAAAACATACTGTTTTCTTACAACTGGTCTTTAAAGGAGCACTTCATATGTCTCCATATTAAATCCCTGAATTTTGTGTTGTTTCTTAATGCTTTGTTTCTTAAAAGCATTGATCATTGAGTTTGTAGAATGTTTACTTTTAAAACAGTACGATGCAGCTCCTCAGTGTACATCTCTGATTTCTTTTTAAAAAGTTTCTTTCTTACCAGGCCTGATGAGACATGTTTATATTATAGTCCCAGCACCTGGGGGCAAACGCAGAGACAGAAGAACCCTGAGTTAGAGGTCAGCCTGGGCTGAGTAGATAGAGACTCCAACTCAGAAACAAAAACACATTATTTGTTACTTTCCATCCTAGTTTCATGCAGTGTAAACTTTTTAAAAAGGGATCAGAGTGGTATTCTATGCTGATCTGGCATAAGGAGGCATTTGCTTATGTCAGAATCAGTTCTTTCCATGAAATGGAGCGTAGCATTTGCAATTTGTAAATCTTCAGATGCTGCTTATTATTATTATTACTACTACTACTACTATTTTTTAAAAACAGGAACTAATTAACTTGCTCCTTTCTTCCTTCTATGTTTGATCCTGACTCTGCTGGACTTTCTGCTGAACTTCCTGACACCACCACTTGGGATTTTGCCAATTTTTCTTGTCACTTTTATTTTGGCGTGTTCCAAATGGACTTTATTATATGTGATTATAG
Seq C2 exon
CACAATGATAGGTTTCCCCAAGGACCTCCATCCCAGATGGGTTCACCCATGGGAAATAGAACAGGTTCTGAAACTCCCCAGGCACCGATGAGTGGTGTAGGGCCTGTAAGTGGTGGTCCTGGCGGCTTTGGTAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCTAATAAGCGTCGGAGATATTAAATAATGGTTCATTCCTGACTGTTTAGAAAAACATTCAATGGTATGTCTTTACACCATGTCTGTTACTAGGGAGAAATGGTTTTACTGTTAATGTATGTAGACTAAAGTTTTTCTTTTGTAAAACTTGAGTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGCTTGGTGAAAAAGATGCCCATCATTGTGAATGTTGAAAAGTGTTTGTGACCTTAGCTAACGATAGCTATGTGGCATTATTATTAAGTCTGTGTAGTTACTTAATCTCAATAAAGAAATGATTTTGCCTAATTTAAAATGTTCTTAGTGGTATTCCCTCATGACCTTACAAAACTTGCTATGGTTGCTTTAGCTAATCCTACCTATTTAAACGTGAAGATGACTTTGTTTTTCTGTTTGTTCCTGTAGCCCTTAAGTCAGACTGTTAGTGAAAGCTGATGTCAATAAGGGACACATACTGTAGTATACTAGTGGGTGGGAGGCATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCTTACATTTCATATAGAGTCTCACTATTCATATATTCTGAGAAAAGTTATTGAGGCTATCTTTGTTCTGTGCTGATTTTTCCAAATAAACCTTTTGAATCTTAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021938:ENSMUST00000022507:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types