MmuEX0037600 @ mm10
Exon Skipping
Gene
ENSMUSG00000021938 | Pspc1
Description
paraspeckle protein 1 [Source:MGI Symbol;Acc:MGI:1913895]
Coordinates
chr14:56722441-56748943:-
Coord C1 exon
chr14:56748835-56748943
Coord A exon
chr14:56725306-56725475
Coord C2 exon
chr14:56722441-56723280
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGTAGATTGTTTTGCATAGATG
3' ss Score
3.69
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
ACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCACAGAGAGCAGGAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAACCAAACTATATGGAAAAT
Seq A exon
ATGCATTTAGCCCAGCACCTGCTGGTACCCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAATGGCGCAGTG
Seq C2 exon
CACAATGATAGGTTTCCCCAAGGACCTCCATCCCAGATGGGTTCACCCATGGGAAATAGAACAGGTTCTGAAACTCCCCAGGCACCGATGAGTGGTGTAGGGCCTGTAAGTGGTGGTCCTGGCGGCTTTGGTAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCTAATAAGCGTCGGAGATATTAAATAATGGTTCATTCCTGACTGTTTAGAAAAACATTCAATGGTATGTCTTTACACCATGTCTGTTACTAGGGAGAAATGGTTTTACTGTTAATGTATGTAGACTAAAGTTTTTCTTTTGTAAAACTTGAGTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGCTTGGTGAAAAAGATGCCCATCATTGTGAATGTTGAAAAGTGTTTGTGACCTTAGCTAACGATAGCTATGTGGCATTATTATTAAGTCTGTGTAGTTACTTAATCTCAATAAAGAAATGATTTTGCCTAATTTAAAATGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021938_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCGTCACAGAGAGCAGGA
R:
CCGACGCTTATTAGGGCCTTC
Band lengths:
250-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types