Special

BtaEX0028826 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus paraspeckle component 1 (PSPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075277]
Coordinates
chr12:36555319-36603318:+
Coord C1 exon
chr12:36555319-36555424
Coord A exon
chr12:36576932-36577101
Coord C2 exon
chr12:36603223-36603318
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTATAGATTGTTTTGCGTAGATG
3' ss Score
3.41
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GCATGAGGAAGAGCACCGTCGTCGTGAAGAGGAAATGATCCGACACAGAGAACAGGAGGAGCTGAGGCGACAGCAGGAGGGCTTTAAGCCAAACTATATGGAAAAT
Seq A exon
ATGCGTTTAGCCCAGCACCTGCTGGTAACCAAGGTCCTCCTGCAATGATGGGTATGAATATGAACAACAGAGGAACTATTCCTGGCCCGCCAATGGGTCCTGGTCCTGCCATGGGGCCAGAAGGAGCTGCAAATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTG
Seq C2 exon
GAGAAAAGGAAACATGGATGAAGCTACCTGAAATTTGGCTTCCTGTGTGAGCCCAAAGTTGAGAGCTGAGGAAAACCTGCCAGAGTTTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003934_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NA


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGGAAGAGCACCGTC
R:
CTGAAAGGAAACTCTGGCAGGT
Band lengths:
202-372
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development