BtaEX0028826 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003934 | PSPC1
Description
Bos taurus paraspeckle component 1 (PSPC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075277]
Coordinates
chr12:36555319-36603318:+
Coord C1 exon
chr12:36555319-36555424
Coord A exon
chr12:36576932-36577101
Coord C2 exon
chr12:36603223-36603318
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTATAGATTGTTTTGCGTAGATG
3' ss Score
3.41
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
GCATGAGGAAGAGCACCGTCGTCGTGAAGAGGAAATGATCCGACACAGAGAACAGGAGGAGCTGAGGCGACAGCAGGAGGGCTTTAAGCCAAACTATATGGAAAAT
Seq A exon
ATGCGTTTAGCCCAGCACCTGCTGGTAACCAAGGTCCTCCTGCAATGATGGGTATGAATATGAACAACAGAGGAACTATTCCTGGCCCGCCAATGGGTCCTGGTCCTGCCATGGGGCCAGAAGGAGCTGCAAATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTG
Seq C2 exon
GAGAAAAGGAAACATGGATGAAGCTACCTGAAATTTGGCTTCCTGTGTGAGCCCAAAGTTGAGAGCTGAGGAAAACCTGCCAGAGTTTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003934_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGGAAGAGCACCGTC
R:
CTGAAAGGAAACTCTGGCAGGT
Band lengths:
202-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development