DreEX6031826 @ danRer10
Exon Skipping
Gene
ENSDARG00000006621 | pspc1
Description
paraspeckle component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9530]
Coordinates
chr1:27164025-27167432:+
Coord C1 exon
chr1:27164025-27164082
Coord A exon
chr1:27165354-27165481
Coord C2 exon
chr1:27166800-27167432
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATCTACGTTGTCTTTTGTAGATT
3' ss Score
10.33
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGAGAACAGGATATGAGAATGAATGAAATGGGAACACGTGGAGCCATTAATATAGGAG
Seq A exon
ATTCATTTAACCCTGTGACAGCAATTAGTGGTAACCAAGGCCCCACACAAATGATGGGCATGGGAGGCAGAGTTGGAGCCATGGGGCCGGATGGATCATCGAAAATGATTCCAGATAATGGAGTGATG
Seq C2 exon
CCTAATGAGCGATTTTCTGAAGGAGGACCCCTTCAAATGGGTTCTCCTGTTGGTGGGCAGACTGGTGTTGACTCCCCTCAGCCACAGCAACACTCACCCATGCTGGTTGGGGCAGGTTCTGTTCCTGGTGTGCTTGGCCAAAGTGGCTTTGGGAGAGGAAGTCCAGTTGGGGGCAGCTTTGATGGGCCTAACAACAAACGACGTAGATATTAAAAAAATAAATAAATCTTTAGTAATTGTGCTCAGATTGGATTATTCTGACTCATGATTACTTATATATAATCATATATTACCTTTCAGTCATTTTGACAAGTACATTTATGTATAATATAGACATAAATTGAATGAGCCAGACCTTGTGTAAATGTGAAGCACTGTTACAAATGATTAAAAGCCATTGAATTAGCTTGTACTTTGCAAAATATTGTAGCTAATTGTAGATTGCTTACTATTACTGTATTCATGTCTTTTATTTAAATATCTGAAACTAAGCAATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006621-'8-14,'8-13,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATGAGAATGAATGAAATGGGA
R:
TGTTAGGCCCATCAAAGCTGC
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]