GgaEX0025507 @ galGal4
Exon Skipping
Gene
ENSGALG00000017142 | PSPC1
Description
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZK88]
Coordinates
chr1:178435123-178443186:+
Coord C1 exon
chr1:178435123-178435180
Coord A exon
chr1:178439363-178439532
Coord C2 exon
chr1:178442717-178443186
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGTAGATTGTTTTGCATAGATG
3' ss Score
3.69
5' ss Seq
GTGGTAACG
5' ss Score
4.76
Exon sequences
Seq C1 exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCTCGTGGAGCAATTAACATGGGAG
Seq A exon
ATGCGTTTAGCCCAGCACCTGCTGGTAACCAAGGCCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTTTGCCTGGCCCTGCAATGGGTCCTGGTCCTTCCATGGGACCAGAAGGAGCTGCAAATATGGGAACACCAATGATGCCAGATAATGGAACAGTG
Seq C2 exon
CATAATGAGAGATTCCCTCAAGGAGGTCCATCACAGATGGGCTCACCTCTGGTTAGTAGAACGGGCTCCGAAACTCCTCAGCCGCCAATGAGTGGCGTAGGTACCGTGAGTGGTGGACCTGGTGGCTTTGGTAGAGGAAACCCAGGGGGCAACTTTGAAGGACCTAACAAGCGTCGCAGATACTAAAACTTACTTCATTCCTTGCTGTTAAGAAATTCCAGTAAACATATACAGTGATATGCTTTTATAATTTTAGCTGTTATCTGGAAACGGTTTTATTGTTACTGTAGTCTTTAAAACAGTTTCTTTTGTAAAACTTTTTTGTATTCAGTCATAGGCTTTGTAGTATAGAGCAGAAATTATGCAGATCATTATGTAAGGCAATGTGTTTGTGACTAGCAAAATACAGTGTGTGACTATGCTGTAAAACATGCGGTTATCTGATTACAATAAAATATAAAATTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017142-'20-30,'20-28,24-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAACAGGAAATGAGAATGGGTG
R:
AGTATCTGCGACGCTTGTTAGG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]