RnoEX0070791 @ rn6
Exon Skipping
Gene
ENSRNOG00000020782 | Pspc1
Description
paraspeckle component 1 [Source:RGD Symbol;Acc:1310122]
Coordinates
chr15:36969807-36976285:-
Coord C1 exon
chr15:36976228-36976285
Coord A exon
chr15:36972666-36972835
Coord C2 exon
chr15:36969807-36970635
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGTAGATTGTTTTGCATAGATG
3' ss Score
3.69
5' ss Seq
GTGGTAACG
5' ss Score
4.76
Exon sequences
Seq C1 exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG
Seq A exon
ATGCATTTAGCCCAGCACCTGCTGGTACCCAAGGGCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAATGGCGCAGTG
Seq C2 exon
CACAATGATAGGTTTCCCCAAGGTCCTCCATCCCAAATGGGTTCGCCTATGGGAAACAGAACAGGTTCTGAAACCCCCCAGGCACCAATGAGTGCTGTAGGGCCTGTGAGTGGTGGTCCTGGTGGCTTTGGCAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCTAATAAGCGTCGGAGATATTAAAATTCTTTCATTCCTGGCTGTTTAGAAAAAAATTCAATGACTTTACACCTTGTCTGTTACGCGGGAGAAATGGTTTTATTGTTAATGTATGTAGACTGAAGTTTTTCTTTTGTAAAACGGGGTTTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGCTTAGTGGAAAAGATGCCCATCATTGTGAATGTTGAAATGTGTTTGTGACCTTAGCTATGGATAGCTATGTGGCATTATTATTAAATCTATGTAGTTACTTAATCTCAATAAAGAAACGATTTTGCCTAATTTAAAATGTTCTTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020782-'18-25,'18-24,19-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGTGATATGGGTCCCCG
R:
TCTAAACAGCCAGGAATGAAAGA
Band lengths:
253-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]