RnoEX0070797 @ rn6
Exon Skipping
Gene
ENSRNOG00000020782 | Pspc1
Description
paraspeckle component 1 [Source:RGD Symbol;Acc:1310122]
Coordinates
chr15:36950257-36997120:-
Coord C1 exon
chr15:36997015-36997120
Coord A exon
chr15:36951082-36951205
Coord C2 exon
chr15:36950257-36950467
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTCTGACCACAAGATG
3' ss Score
3.43
5' ss Seq
AGCGTAAAT
5' ss Score
-2.73
Exon sequences
Seq C1 exon
ACATGAAGAGGAACATCGTCGTCGTGAAGAAGAAATGATCAGACACAGAGAACAGGAGGAACTGAGGCGACAGCAGGAGGGCTTTAAACCAAACTATATGGAAAAT
Seq A exon
ATGGCACCATGATAAAGGCATCTGTTGCTAAGTGTGAACCACATGAGTTTGATCTCTGGAACTGACATGGTGGAAGAAGAAGAGAACGTCTTCCCAGAAGTTGTGACATGCTCACAGATACAGC
Seq C2 exon
GTTGTTACAACATGAATCTACTGAAGACCCTGGTCTGTTGGAGAAGAACTTAACAGCCCAGAATGCTGGCCTTAGACTGCTGCATTAGGTCCTTTGGGTCTCCTACTTTAGAAAGGAAGCTGCTGCTGCTGCTTACAATTCTGGATGCTCCAGTTCGGATTGGCTCACTACACTTGCCATAGGTAATAGTCCCAGTGTCGTCGTTTGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020782_MULTIEX1-4/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAACATCGTCGTCGTGA
R:
AGAATTGTAAGCAGCAGCAGCA
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]