DreEX0059070 @ danRer10
Exon Skipping
Gene
ENSDARG00000006621 | pspc1
Description
paraspeckle component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9530]
Coordinates
chr1:27148568-27165481:+
Coord C1 exon
chr1:27148568-27148673
Coord A exon
chr1:27164025-27164082
Coord C2 exon
chr1:27165354-27165481
Length
58 bp
Sequences
Splice sites
3' ss Seq
AACATCTCCTTCACTTTCAGAGA
3' ss Score
9.55
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCACGAGGAAGAAAGACGTAGACGCGAGGAAGATATGATTCGTCATAGAGAGCAGCTAGACATAAGACGCCAGCCAGATGGATTCAAGTCCGGTTTCATGGAAAGT
Seq A exon
AGAGAACAGGATATGAGAATGAATGAAATGGGAACACGTGGAGCCATTAATATAGGAG
Seq C2 exon
ATTCATTTAACCCTGTGACAGCAATTAGTGGTAACCAAGGCCCCACACAAATGATGGGCATGGGAGGCAGAGTTGGAGCCATGGGGCCGGATGGATCATCGAAAATGATTCCAGATAATGGAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006621_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGTAGACGCGAGGAAGA
R:
TTTGTGTGGGGCCTTGGTTAC
Band lengths:
145-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]