HsaEX0050671 @ hg19
Exon Skipping
Gene
ENSG00000121390 | PSPC1
Description
paraspeckle component 1 [Source:HGNC Symbol;Acc:20320]
Coordinates
chr13:20251864-20304484:-
Coord C1 exon
chr13:20304379-20304484
Coord A exon
chr13:20283682-20283739
Coord C2 exon
chr13:20251864-20251963
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACAACTATGTTTACTTACAGAGA
3' ss Score
6.61
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACATGAAGAGGAGCATCGGCGGCGTGAGGAAGAAATGATCCGACACAGAGAACAGGAGGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT
Seq A exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG
Seq C2 exon
GGTGATAAAAGAAAATGTGGCTGAAGTTACCCGAAGTTCAGCTTGCAGTGTAATTCAGAAGAGTTAAGACCAGAAGTACTGGAATCATACTTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121390_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCGTGAGGAAGAAATGAT
R:
CTGCAAGCTGAACTTCGGGTA
Band lengths:
136-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)