GgaEX1046745 @ galGal4
Exon Skipping
Gene
ENSGALG00000017142 | PSPC1
Description
Paraspeckle component 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZK88]
Coordinates
chr1:178416774-178482435:+
Coord C1 exon
chr1:178416774-178416882
Coord A exon
chr1:178461814-178461917
Coord C2 exon
chr1:178471010-178482435
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTCTCTATTTTTTAGGTT
3' ss Score
12
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ACATGAAGAAGAGCATAGACGCCGTGAAGAGGAGATGCTACGCCAGAGGGAACAGGAGGAATTGAGACGGCAGCAGGAGGGAGGATTTAAGCCAAATTTCATGGACAAT
Seq A exon
GTTACTGTTAAAATGTTAAAATGCTGATGAAGACGGGCTTCTGTAGAATCCTGCTGCTGCCTTATGAATACAAAAGGGAATCCTAAACCAAGCTTTAGTATGAG
Seq C2 exon
TACAAACAAGCAGAAGCCAACACAGCAAGACCCCTACCTTCTGGCACATTCTGTGGGGGTTTATAGTTGAAGTCTGTGGAGAAGTCTGGCCCTTCGCAGAGACGGTGACAAGCAATTGGGAAGACTGGCTCCAGCAAAACAAGGCGAGCTTCAAAATAGTCCCTGATGGTATCTTCTGCTACTCTTGAGAGTCTACATGAGGAAACAAGCAAGGCCTGTACTTCACACTATCATTACTTCAGCAGACAGTCTTGAAGAGAGATTATACAAAGAACGATTCTAGATTTCCTTTTCGCCTTCCCAGTTGTCAGGACTTCATCACCTACATTTATGCACAGATGAGCCCCAGGTCCCAACATTTTGTTAATAAAACATTTTAACATTTTATCGGAGACCTGTTTGTGAAATTCCATCTGTCAGGTCTCAGCATTTTACTTTTGTGGACAAGAACACTACAGCAGACACCAGAAGTCTCAGTAACCACATACTTCTTTATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017142_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATAGACGCCGTGAAGAG
R:
GAAGCTCGCCTTGTTTTGCTG
Band lengths:
251-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]