GgaINT0112896 @ galGal4
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178470139-178471201:-
Coord C1 exon
chr1:178471047-178471201
Coord A exon
chr1:178470267-178471046
Coord C2 exon
chr1:178470139-178470266
Length
780 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGAATTGCCTTCCCTTCTAGGAT
3' ss Score
11.39
Exon sequences
Seq C1 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
Seq A exon
GTAGGGGTCTTGCTGTGTTGGCTTCTGCTTGTTTGTACTTCAAAAACAAACAAACAAAAAAACCAAAATAGTGCATTAAGAAACTGCCCTTTTGTCTTAATTATCTGCTGTATGAAATACATGAGATGTTGTAATACAGTACGTGATATTAATGGTGCTCCTTATATTCAGGTTATCGAGTTTTGGAATGCAGGAGTGATATTTTGATGTGTTGTGGGTGAAATACTGCTTCAACTGGGATTTTGTAGTTGTTTGTCCAGTTTTTATTCAGAGTTGTAAACATCTCATTTTTTTTGATACACATTACTCAATTAGGAAGCATTATATAAATTTATATACTAAAATGGGGTACCTGTATATATGAATACTGTTGCTTATTGAATTTCAGTGGAGTTCATAAACACCCATACTTGACTGAGCTCAGTATTCCTTACCAAGAGAAAAGACAAGCCAAACTATAGATAAATCTAAAACTGCAAAATGAATTGTTCTCAAGGATTCCTGCATCTGTTTTGCTTTCCTTCCTGACCCCTGCACGAGGTTTATTTTGCTGCCAAAACCCCCTTAGCCTTGTGAGCAGCTCAGCTGTGTTCTCTGCTCGGGCTCACTGGCTTGGGAGATTGGATTTCTACATGTTGCTTCGATGCTCCTGTGGAGTTTAATATTGATACAGATGATAAAGGTACCTCGCTGTTTGCCTTCAGAAGTTTGGTGCTTGCAATTGTTCTAAATTATGAATCCCATTTCATGTTTGTGTGACTGAATTGCCTTCCCTTCTAG
Seq C2 exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAAGAGTAGCAGAAGATACCA
R:
AATACAGGGAGCTGGAATTTGTCA
Band lengths:
278-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]