DreINT0097301 @ danRer10
Intron Retention
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21657738-21659589:-
Coord C1 exon
chr9:21659432-21659589
Coord A exon
chr9:21657863-21659431
Coord C2 exon
chr9:21657738-21657862
Length
1569 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
CATTGTGTTATATGTCTCAGGTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTTATCAACAGTAGCGGAGGAGACAATCAGAGCTTATTTTGAAACCCGACTGGCTCTGCTGGAACCTGTATTTCCTTTGGCTTGCCACAGATTGTGTGAGGGACCAGACTTTTCACTAGAGTTCAATTACAAACCCCCACAACACGCACCAGGAGAAG
Seq A exon
GTGACCCAAATTCTCTATAACCTTAATTTCACTTACCTTAAAGGGGTGGTCCACTACAATATCATATTTTAAACTTTAGTTCATGTGTAATGTAGCTGTGTGAACATTAGCAACATCTCTGAATGTAAAAAGCTCAAAGTTCAATGCAAAGGAAGACCTTGGTTTTTACAGAGTTAGCTTAGCAAAGCCTACAATTAACAAATTTTGGGGACTACAAAAAATACTTCCAGCCCTTGTGAGATCACAAATGTTCTTTTACCGCACACACAGACTCCGCAGCTAAGGGCCGTGGCCATAGGCACTGTGACGCTGTTTCCACAGAGCTTCGTCTGCTTCTGTATTTGGGCTTCCAAAGGACACGACACAAAGACTGAAGTGCTTACAGTTCAATATTAATTATGTTCCAGAGAATTATAAAATACATAGCAAGCATGATTTGACAAAACACAGCTTCCAGAATCTCTCCCAGTTCAGTGCTGGATTTGGTTAAAATCTCCTCAAAGCAGAAGCTGTGAACTACAACCCGTAAGTGTATTTATTTGTCAATTGATCATGACATGTACAGTGTGTAGCGTTAACGTTATGCTGTAGCAACGATGTAAACAATGGGTAATGCTGTTTTGCACCGCAAACGATTTAGCTACAAATTAATATTTATCAGTCAAACTGCTGTAAACACACACACACACTTCACCAGCACGTGCAGCAACTCTATGTGTGTGCGCGATGTTGCATTGATTCTCTTTAGGCAGCTTTTCCATGCATTTTACATCTCAGATAATGAAGTCACAAAATATATGTGAATGATACATATTACTTACACAGGCATATTCCGGATATATGTGTAAGATGTTGTGTAACGCGTTGAGTTAAAAAAAAAATACAGGATAGCTTACCTAACTTGTGTAGCAGCAGAAAAATAAATCAAGGCTCACACAGGTCGCATCCCACATCTTGTGCTTTATTCTTCTGTCACGATATATTACAGAAAATAACTTAATCCGAGCATCAGAGGAAAAAGAAAAAGAAAGTCCCACGCTTGTTACACACATCTACAGAACGTTCACACATTCACACACACACACACACAGACACAAACACACACACATAGACACACGCAAAAGCGATGTCTCTTAAATTAGCAGCACCCCATTTTCACTCGTTACAGACACTTGTCAGATGTTATTTTAGAGAGCAGGCAGGAGGTTGACTGAGGTTTACACAGCAGAAAAGTGTGTGCTTGGTCGGGTGTGACGTGGAGCCGATCCGCGAATCGCAGCACACTATGACAATGACCAATCAGAGTCACTTGAAGGCGGGCCTTTCAGAGGAACTAGGAAATATGACAGTCGTTTTCATCTTAGCCGAGTAGCTGTATATAATCAAAGTGAGATTTATGAAAAAATACATGATTTCCTTCAAGTGAAACATGAGCACACATTGCTTTGCATTTTATAAACAGAACCAAGCCTTAAAATTACATTCTGGACCACCCCTTTAACTGTGTATCAAATCTGGCCACTTCAAATGCCAACAAAGTGTTTAATATCATTGTGTTATATGTCTCAG
Seq C2 exon
GTTCTGGAATCCTACTCTTTATCTTCCATGCAAACTTCCTCAATGAAATCACAGCTAGACTCTGCGGGCCCTGTAGTGTTCATGCTGTGGTACTGAATGACAAATTTCAGCTGCCCATCTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576:ENSDART00000080404:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.7=7.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGTAGCGGAGGAGACA
R:
CAAGAAGATGGGCAGCTGAAA
Band lengths:
279-1848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]