GgaINT0112896 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183529381-183530443:-
Coord C1 exon
chr1:183530289-183530443
Coord A exon
chr1:183529509-183530288
Coord C2 exon
chr1:183529381-183529508
Length
780 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGAATTGCCTTCCCTTCTAGGAT
3' ss Score
11.39
Exon sequences
Seq C1 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
Seq A exon
GTAGGGGTCTTGCTGTGTTGGCTTCTGCTTGTTTGTACTTCAAAAACAAACAAACAAAAAAACCAAAATAGTGCATTAAGAAACTGCCCTTTTGTCTTAATTATCTGCTGTATGAAATACATGAGATGTTGTAATACAGTACGTGATATTAATGGTGCTCCTTATATTCAGGTTATCGAGTTTTGGAATGCAGGAGTGATATTTTGATGTGTTGTGGGTGAAATACTGCTTCAACTGGGATTTTGTAGTTGTTTGTCCAGTTTTTATTCAGAGTTGTAAACATCTCATTTTTTTTGATACACATTACTCAATTAGGAAGCATTATATAAATTTATATACTAAAATGGGGTACCTGTATATATGAATACTGTTGCTTATTGAATTTCAGTGGAGTTCATAAACACCCATACTTGACTGAGCTCAGTATTCCTTACCAAGAGAAAAGACAAGCCAAACTATAGATAAATCTAAAACTGCAAAATGAATTGTTCTCAAGGATTCCTGCATCTGTTTTGCTTTCCTTCCTGACCCCTGCACGAGGTTTATTTTGCTGCCAAAACCCCCTTAGCCTTGTGAGCAGCTCAGCTGTGTTCTCTGCTCGGGCTCACTGGCTTGGGAGATTGGATTTCTACATGTTGCTTCGATGCTCCTGTGGAGTTTAATATTGATACAGATGATAAAGGTACCTCGCTGTTTGCCTTCAGAAGTTTGGTGCTTGCAATTGTTCTAAATTATGAATCCCATTTCATGTTTGTGTGACTGAATTGCCTTCCCTTCTAG
Seq C2 exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAAGAGTAGCAGAAGATACCA
R:
AATACAGGGAGCTGGAATTTGTCA
Band lengths:
278-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]