BtaINT0094529 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36609593-36611394:-
Coord C1 exon
chr12:36611240-36611394
Coord A exon
chr12:36609721-36611239
Coord C2 exon
chr12:36609593-36609720
Length
1519 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTACATCTCCTCGATTCAGGCT
3' ss Score
8
Exon sequences
Seq C1 exon
ACTTTCGAGAGTAGCTGAAGAAACTATCAAGGATTACTTTGAAGCACGTCTTGCGCTACTGGAACCAGTCTTCCCAATAGCGTGCCATCGCCTCTGTGAGGGGCCAGATTTCTCAATGGATTTCAATTACAGACCCCCACAGACTATACCAGAAG
Seq A exon
GTAAGCCTTGTTTTTCTCCCACTTTGAAATGTGACATTTTAAACATTAATAACCTTTTCTTTGAAGAAAACCTTAACAAACTCCATCATGTATACTAATTATATAAAATAGGTAAGAACAAAATGCAGCCGATACCATTGTAGCTGACCCTGAGAAGTCTACACAGCAGTCTTTACATTTGTTTTAGAAGTTTAATAAGTTTAATAATACTTTTTATTAAAATTTACTGAATCTAGCTTTCAACATGGTTTAAGTCCAGAATCAATATTTTTCTTGAGTTTTATTATTGAGTCTTGCCCTTTAGAAGAGATCAAGAATAAAGAGAATGTGTTGCCCCATTGTAAAGTTGAGTAGTAAGAGATGAGAATTTCAGTCCTGCCTCCTATGAGTTTATGCTTAACAGCTACTTGGCAGGTGAGACCATGGCCGCCTCTAGGACACGGGTGCCGAATATATGGAATGGAGACAGCACTTTCTTGGCCTGAAAGGTGGGAATTGGGTTGGGTTCTGGCTTTTGTTTTGTTTGTTCTTGTTCAGTTGCTCAGTCGTGTCCCAACTCTGCAACTCTGCAATGCCACACTCTGTCCTCCTCTGTCTCCCAGAGTTTGCTCAAACTCAAGTCCATGGAGTCAGTGATACCATCTCATCCTCTGCTGCCCCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCATCAGGGTTCTTTTCCAGTGAGTCTGCTCTTCACATCTGGTGGCCAAACAATTTAGGCTTCAGCATCAATCCTTCCAGTACACACTCAGGGTTGATTTCCTTTAAGATCAACTGGTTTGAAATGTTTTGTTTAAATATTTGTTAATGGAAACTTAAGCTACAGCTCTACCAATCAAAGCCAGTCATTCCTAACATCTTAGTTGTTAGTCAGCTGTGGATTTGACTGTCCAAGTGGACCATTTGCTGGGCACCCACACCAGTGCTCTGGTGCAGCTGGACAGCCCTGGGTTACATGTGGCTTTTTCTGCACATGCACAATGTCTGCAACCACTAACAATGTTTTCTACTCATCTGAAATCTTACCAAGACAGCCAGCTATCCTGACTCTTGAGACTTGGCATATGGTCTTCTCAGTCTGCTCTCAAAGTCCCACCCAGACCAGGACTTTCAGCCAACACCTTTAAAAGTACTCAAGTTTGACAGACATTGACCTTGGTATCTTGAGGGGTATGTAGCTCTTAAAATTGAAGGAAAACAATTTATATTGATAACCATGAAACAAATGCCAGCAAATTGACTAGAGTACCTTGGTCATACCCTTTGTTTGGATCAAGTATGTGTCTTGTCAGACTAGGGTTAAGGACCACTCTGCTCCTGGATCCCAGTCTCAGGTTGGCAGGAACATAAACATGACCTTCATGAACACGTTTTCTAATAGGATTCCCCTGTGGATGGCCTGTGCACTTAAGCTCTCATGATGTCCTCAAGCTCTGCGAGGTGCCGTCTTTGGATGGAAATTAAAATCTGTATTTACATCTCCTCGATTCAG
Seq C2 exon
GCTCTGGCGTCCTGCTGTTTATCTTCCATGCAAACTTTCTGGGTAAAGAGGTCATTGCTCGCCTCTGTGGACCATGTAGTGTACAAGCTGTTGTTTTAAATGATAAATTTCAACTTCCTGTTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCGAGAGTAGCTGAAGAAACT
R:
TTAAAACAACAGCTTGTACACTACA
Band lengths:
254-1773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development