HsaINT0104631 @ hg38
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19668377-19670363:+
Coord C1 exon
chr13:19668377-19668531
Coord A exon
chr13:19668532-19670235
Coord C2 exon
chr13:19670236-19670363
Length
1704 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CACACATCTCCCATTTTCAGGCT
3' ss Score
9.67
Exon sequences
Seq C1 exon
ACTTTCAAGAGTAGCAGAAGAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTTTCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACATACCAGAAG
Seq A exon
GTAAGCCGATGCCTCCCTTCACACTTTTCTATGTGAAGTGTGACACTATATTAACAGATTTTTAGACAGAATCCTTTCTTGGAACAAAACTTTAAGGAAATTCCATTACGTGTAATAATTCTGCAGACCGGTTAACAGTAGAGCCACTCTGGTGGAAGAGACATCCAGCTGACACCCCATCCCTGTTTTAACACCCATATAGAGCATGGAAGTTAGGTCTTAATAATCACACTAGTTCTCAATGAGTTTTATTAAAATTCAGCGTCAAGATTCTAAGCCTAGAATGTTTTTTCCCTGAATTTTGTTGTTTGTAATAGTCTTTGCCCTTTGAAAAAGAAAAAAATAGTCTTGCTCCATAGTAAAGCTGAGTGGAAAGAGATGGAGAAGCCACTTTCCTCTCTAGCCTCTGCTCGACAGACCCTCTCCAGGCAGGGCTGCGGCTGGCCCTCTCTACACGTGGCGCCAGGTAGACGTGGAGGCAGTGCAGTCTGCCGAGGGGAGGAAGCCGGGCTCTGGCTTTTTTTGCTTAGAAACTCCTGTTCCCCATTTTGTAAATGGTTTGTATTCATTCCTGGAAAATGTATTTAAGAACATATAGCCCTGCCCCTGAAAGAGCCGTTTGTAATATCTTAGTGTTGAGAGAACTTATCAGGTGGTTGCTGTTGTTTTGAGATGGAGTCTCCCTGTGTCACCCAGGCTGCAGTGCATGGCATGATCTTGGCTCACTGCAACCTCTGCCTTCTGGCTTCAAGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCGCGTTCAGTAATTTATAGTTTTGATTATTCGGGTGGACCATCTGCATTGCCAGGTATGAGTACCAGAGAACGATGCCCTGAGCTGGCCCTGGTGAACCTGAGCCCCCACTGACACCTACAACTGCTGGGCCTGCAGTTTTCTCAGCATGTGTACAATGTCTGCATCCACCAACTTTTTTTTTTTTTTTTCAGGAGTCTCACACTGTTCCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAACCTCCCGAGTAGCTGGAATTACAGGTGCCCACCATGATACCCAGCTAAATTTTGTGTTCTTAGTAGAGATGGGGGTTTCACCATATTGGCCAGGCTGATCTTGAACTCCTGGCCTCAAGTGATCTGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCATGCCTGGCCAATTTTTGGTTATGTATTAATCAGAAAAATTGGAAGGGGCAAAAGGGTATGTGGAAGAAAATGGAAAACCACTCAGACCCACACCCAAAGATGCCCACCACAGGAATGTCCCTGGGACGTGTGCACATTCAGCAGCAGTGTTTAAATACCAGTTAAATAACTTCAGTGTAGAAAATCATACGTAAGTCTTTTCCAGGAACTGTCAGCAGAGATTACTTGGGCAAAAGGTAAAAAGAGTTCTGTGGTTGAAAAATGCCAGGTGACACGAGCTTTGAGAGGGCCAGCCTCCTCTGAGCCTCCAGGCAGAGTGGGTGATGCCTGTCTGACCAGGCCCAGCTCAGGGGCCTGCTTCCATCTGGTGTTGAGTGTTCCTCTGGGGACTGAAGGTTGCCTTTGAAGTAATTCACACACATCTCCCATTTTCAG
Seq C2 exon
GCTCTGGCATCCTGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTCTGTGGACCGTGTAGTGTACAAGCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199:ENST00000361479:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCAAGAGTAGCAGAAGAGACA
R:
GAAAAACAGGAAGCTGAAATTTATCA
Band lengths:
281-1985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development