MmuINT0100291 @ mm9
Intron Retention
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:57314458-57315579:+
Coord C1 exon
chr14:57314458-57314585
Coord A exon
chr14:57314586-57315495
Coord C2 exon
chr14:57315496-57315579
Length
910 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTTCTCTCTTTCCCCTCTAGGAC
3' ss Score
14.3
Exon sequences
Seq C1 exon
GCTCTGGTGTCCTCCTCTTTATTTTCCATGCAAACTTTTTGGGCAAAGACGTTATTGCTCGGCTTTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGATAAATTTCAACTTCCTGTTTTTCTG
Seq A exon
GTAAGATTTTTTTTGGGGGGGTAGTTCTTAATTATTAAAAATTGTGATCAGAGCCAGGTGACATAATTCATGTTTTGTTTGGAGTTTTTGGGAAGAGGCTTTTAAGATAATAATCTGTATGTAGGTGCTTAAGGCAACCTGTGGTAGTAACTTGGGTCATAATGCAGAGCAACAAGAGGCTTTATCCACACAACCCAAGACAGGGTCTTGTTACACAGCTTAGGCTACAGGCCCAGAACCTACTTCAATATTCCAGCCTCTGCCTCTTGAGGTCTAGAACTATGGACATTCAGTTCCAAACCTGGCATAATTTATAAAATTGATAAAGATCCATGTGAATGCTGGGCATACGTGGTGGTCACCTGGCAGCTGTCCTGCCTATAAAGGATGATTGCACATTTGTACAACATGCCATGTACACCTCACACAGGTGTGCATAACAAAATGTAAAGAATGTTTACAGAAAAATGTGTATATTAGTGAACTTCAGACAATCCCCACTCACTATAAAAGAAAATGATCCAAATTGTTAGAACATGTTAATGTTTATTCACTTAAATCGTGCTACCATATGTCCTACAGAAAACAATGTGAGACTAGAATAGAATAGTAGCATGCCACGCCCTCATTCTAACACACTCTGCTGCTGGAACTCTTCCAGAGGCTAATAAAATGAACACCTTGTATTGAATGCAGTCATGTGTTGTTTTTATTTCAGCCCTAGGTAGCCTAGAACTCTTTAGACATGGTAAGCCTTGAAGGTGAGGTTTTTGGGGGGCTGCACAGAGAGATCCTATCTTAAAATTCAAAAACAAAACCCCTCAGTTCGCTGATCGGAGTTCCTGGTCTCTATTGTAAATGTCACAGCCCTGACTTGAGTCTGACTTTATCTTCTCTCTTTCCCCTCTAG
Seq C2 exon
GACAGTCACTTTGTTTATTCATTCAGTCCTGTTGCTGGCCCCAATAAGTTGTTTATAAGGTTGACGGAAGCACCCTTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-Mphosph8:NM_023773:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGTGTCCTCCTCTTTA
R:
CAAAGGGTGCTTCCGTCAACC
Band lengths:
207-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: