BtaINT0094758 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47721711-47723007:+
Coord C1 exon
chr19:47721711-47722125
Coord A exon
chr19:47722126-47722833
Coord C2 exon
chr19:47722834-47723007
Length
708 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGGCTCCCCTCTCCTGCAGAGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTTTCCTTCCAGAGCCCAACGTCTTCGTCATCTTCAGCCATGGACTGCAGGGCTGCCTGGAGGCCCAGGGTGGGCAAGTCCGAGTCTCTCCAGCCTGCAATGCCAGCCTTCCTGCCCAGCGCTGGAAGTGGGTCTCCCGAAACCGGCTCTTCAACCTGGGCACCATGCAGTGCCTGGGCACGGGCTGGCCGGGCACCAACACCACCGCCTCCCTGGGCATGTACGAGTGTGACCGCGAGGCACTGAGTCTTCGCTGGAACTGTCGCACCCTGGGCGACCAGCTGTCCTTGCTCCTGGGGGGCCGTGTCGGCAACACATCCAAGGCTGGCAGCCCCGAGCGCGGTGACCAGACCCGCAGCGGCCAGTGGCGCATCTATGGCAGCGATGAGGACCTGTGTGCGCGGCCCTACTATG
Seq A exon
GTGAGAGGCTACCCCTGGTGTCAGGGGCCTGGAGCCACGAGGGACAGATGCGGGGGAGACAAAACCTTGGCCTCCACAGGCCTCTGGCAGTCAGCTCTTTCATCGTCATGGGAAGCATTTGGGGATCATGGAGAAAATGAACTTCAGAGCATTTATTTGCCTTAAAAAACTTACAAAACCTGATACACTCTTGTAAAGACTTCAGTCAGTTCAAAAGTGTATAACGTACAACTGAAAGAGAAACCCCTTTTCTCCCAGGCCCACTCTTCAAGGGGACCCCAGGGTCACCGTCCACAGGTGTCTCCATCCCCCTTTTGCACGGGTGAATGGGGACTGGAGTCACCCTGTGAGAAGCCTTTCCTGGTGGGCAGCTCCATCCTGGAGGCCCTTTCCCAGGATACCTCCTAGAGTGCCCAGATGGAACTTGGCATGTGAGGCAGCTGAATTTTGGACAGGTGTTAGGGGCCCTAGGGGACCCCCTTTCCCAGCCCGATGGGATGAGCAGCGGGACCTCTCCCAGGCTCCTGGGCTGACCCAAGGGCAGAGGCAGCCTTCCGGCCACTGTCTGGCATCGCTGCCCCCTCCCTCTCTCTGCTGACCCCTGCCCACCCCGGCTCCCGAGGCCGTAGGGGATTTTCCCTGAGGGATGAGCGGGCTGGGCAGCCTCTGGGGTCCAGATGCCAAGGGCCTGGCTCCCCTCTCCTGCAG
Seq C2 exon
AGGTCTACACCATCCAGGGCAACTCCCACGGGAAGCCGTGCACCATCCCCTTCAAATATGACAACCAGTGGTTCCATGGCTGCACCAGCACTGGCCGCGAGGATGGGCACCTGTGGTGCGCCACCACCCAGGACTACGGCAAGGACGAGCGCTGGGGCTTCTGCCCCATCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739:ENSBTAT00000020897:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004014=fn2=WD(100=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCTCCAGCCTGCAATG
R:
AGTTGCCCTGGATGGTGTAGA
Band lengths:
357-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]