RnoINT0094076 @ rn6
Intron Retention
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93555606-93558461:+
Coord C1 exon
chr10:93555606-93556007
Coord A exon
chr10:93556008-93558287
Coord C2 exon
chr10:93558288-93558461
Length
2280 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ACGGCTCTCTTCCCCTCCAGAGG
3' ss Score
10.24
Exon sequences
Seq C1 exon
AACCCGATGTCTTCCTCATCTTCAGCCAGGGGATGCAGGGCTGCCTGGAGGCCCAGGGTGTGCAGGTCCGAGTCATCCCAGTCTGCAATGCCAGTCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGGAACCGACTCTTCAACCTGGGGGCCATGCAGTGCCTGGGTACCGGCTGGCCTGCCACCAACACCACAGTTTCCCTGGGCATGTATGAATGTGACCGAGAGGCCTTGAGTCTTCGCTGGCAGTGTCGTACACTAGGGGACCAGTTGTCTCTGCTTCTGGGGGCCCGTGCAAACAATGCATCGAAGCCTGGTACCCTGGAGCGCGGCGACCAGACCCGCAGTGGCCATTGGAACATCTATGGCAGTGAAGAAGACCTATGTGCTCGACCCTACTACG
Seq A exon
GTGAGGGCTATTGCAGACAGGAGGTGCCAAAGGGACAGGTTTAGGGTAACGAGGCCTTTGAATTCTGTGGGCTCTTGCCAGTCACTGTTTAATAGGTAGAAGTTCTAAATAATTAGGAAAATTAAATTCAAAGGGTTTAACTTTAAAAAAAAAAGATTAGTGGCTGGGAAGATGGCTCAGTCAGTAAAGTGCTTGTTAGCCAAGGATGAGGAGCCAGGTCAAATCCCAGAGTCTGCATAGAAAGATATATGCATGGCAGCATACTTATAAACCCAGCACTGGGAAGGCAGAGGTTTCAGGAGCAAGTTTCAGGAGTTGCACAGAGAAACCCTGTCTTGAATAATAAACAAACACACACACAAACAAACAGAAAAAGACCCACCATACACAGATAACTCAGACTAAAAAACAAACAAACAAAAAACAAACAAACAAAAAGAAAACCAACAACAACAACCAGAAGCGAACATTACAAATAAAATTATAATCCCATAAAATGGAGGATAGCTGGTTTCTTAGGAGATGCCACCTTTTCCTTTCTTTCTCCTCTGAAATGTAAATCATCATCGGGAGAAAGAAACATTGCAAAAGTCTTGAGACTGGAGACATTCAAATGGGCATAGAGGTCAGCGCTGACATCTTGTTTCAACCCTCACATACATGCATGTGAATACATACCTGAATACATGCAAACACGCTCGTATGGGTGTGCACACAAATAAAATAAAAACCTGGGGCTAGCAAGGTGGCTCAGTGGATAAAGCAGCCTGGTGCCTGGGCCCTACATGGTAGAAATAGAAAACTCCTGAAAGTTGCCCTGTCATACACACACACACACACACACACACACACAAACACGCACACTCACATGCACACACACATACTCATAGGGACATACCACAGAGACTAACACACTTACTCACACATACATACCACATAGACTCACAGATTCACACACCAAATAAATGAATAAATAAGTAAAGCAATAAAAAATTAAAGATTAAAAGGCAAAAATCAAGAAAATTTCAAAACTAGCTTGCACCATCCCATAAAGTGGCAGAGAACATGAAGAACAAGGATTGTCCCTGTGCCCAGGGACAGTGGCATTGTGACAGGAAATGGAGTGACTGTGGAGGCTAATCTGATTATTCTGGGGGAAAGGCTAACACTGTAAAGAGGATTGTGCTGAGCCTTGGGTGTGTTGAGCCCAGTTAAGGGCCTTAGAGAGCGGTGACTAATAAGACATGGCAGGTTTTGTGGCTCAGACTTCAGTGGGGAAGGAGCACTAAGGCCAGCCTTGACTACACCACGGATTGGAGGCCAACCTGGGCTATGTCTCAAAGACAGGGAGTAGAGGAAGGGGGGGCTGCAAGTAGTTTGAACTGAGAGATGATAGAAGCTAAGAGAGCCACTCCTAAGCTGCAGTCATTAGGAAGACGATAGAAACAGGTCATCAGAGCTGGCAAGATGGCTCCACTTGTGAGGGCAACTTGTGGGACAAACCTGACCTCCTGGGGGACCCACATAGCGGAAGGAGAGACCCAGCTCCCAAAAGTTGCCCTCTGACCTTTATATATTATGTGTCTCCCCTCCCCATTTAAAAAATGCAATCATTTTTTTTAAATCCTGATAGTATATTAAAATAATTCAAAGAATTTAAGATTACTACTGCTCATAAAAAGGGATGACTTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACAAGGCCCTGGGTTCGGTCCTCAGCTCCAAGAAAAAAAAAAAGACAAAATAACAAAAAGGGATGACTTACCTCCCACTCACTCTCCACAGAGATCTGTAGCAGTGCCTCATAGGTTTTGCAGGTGGCTAATGGGGATCTTAGTCACTCAAGAGCTTGTGACCGGATCCGTCATTGGAATTCTTCCCTGGAAAGACACCTGTGTTCCAAGATAGACCGTTTAGGGACGGGTAGCCTGGAGCCTTGGTTGTACGGCTAGCTGGCTCAGCTCCCGTGGCATTGAAAAGGCATTGGAGGGGTTGCAAAGCCCCTCCTAGTGGGGGTGTGCAGTGGGCCTGTCCCACACCCCTCAGCTGTCTAAATAGCAAGAGTTGGTTCTCTCTTTAAAGCCATTATCTGGTTCTGTTGCCTCCCATCCCCCACCCAGGCCCCGACTCCCCAGACCCCTGCTTTCTCCCATATTCTCACTCTCTTGGATTGTGGGAGGTTTTCCCTGAGGGGTGAGGTGGGACAGAGCTGTGGGGCTCCAGGCATCAAGGCACGGCTCTCTTCCCCTCCAG
Seq C2 exon
AGGTCTACACCATCCAGGGAAACTCCCACGGGAAGCCGTGTACTATCCCCTTCAAATACGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGGGAAGATGGGCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548:ENSRNOT00000055137:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004014=fn2=WD(100=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]