BtaINT0095280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015522 | MRPS31
Description
Bos taurus mitochondrial ribosomal protein S31 (MRPS31), mRNA. [Source:RefSeq mRNA;Acc:NM_001076015]
Coordinates
chr12:21854977-21858819:+
Coord C1 exon
chr12:21854977-21855143
Coord A exon
chr12:21855144-21858534
Coord C2 exon
chr12:21858535-21858819
Length
3391 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTTTTCTTTAATCTTTTCAGGAC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GCTTCATCCGCCGTTGTTCCTAGTGTTGTTCGTTTCTCGGAGATGTTCCCGAGGGTCTCGGCGGTCCTCCCTTTTCGCCCCCTTTCCCGGCTCCCTCTGTGCTCCGCAGGCCCGGAGGCATCGGCGGCCACCGTTGTGCCCCTCGCTTCTCCGCATGGAACTGTCAG
Seq A exon
GTACCGCGTTTCCGCGCTGGTGGGCCCGCAGGTCTCCAGGCACCCCCTGTCCCGGCTCCGGCACATTCAAGTTTAATTTTTCTCCGGCGTCCTGGGGTCCGTGTTATGACCCGCGAGAGCTTAGAAGCTGCCGCTCTAACTCTGAGCAAGGGAAAATCCCAGAAAGATAAGGTGACTTGCCCAAGGTCATAGCGTGCGTGGGGAACAGCTCCGGTCACAGGCCTGGGCCGCTGCCCTGTGCTCTGCCTACCACCTACCGCCCCTCATCTCTCTTCCCGCTTCTCCCCTCATTTTATCCAGGTTCCAGAAAGCTAAATTCTTTTGTTTTATGTGCTTTTTTTTAAAACCTCCCAAGACTGTGATGGTCTTATTCTTACCTTCATTATTGAAAGCGCTGATCTTTATGTCAGCACTGGGGTTATGCCCCGAATACACAGTCCTGCCATCGCAAAGCTTAGAGTTCCACCAAGTAGGCAGTTAAAGTATAGTGGAATAACCGCTGAGATAATGTGAGTTGCGCAGAATACGGCAGAATTCGTCGAACAGGTAATAACTGGATGAGCAGAGACGCCTGACCGTTGTAGGAGAGGTTCAGGGTGTCCTTTCTGCAAAGAAGTCTGGTAAAATCTGAAGGGGTCCCAAGGGTTTGAGTTAGCCAGGAAAAAAAAAGATTTGCAGCATCAATTCAGTTTAGTCGCTCAGTCATGACCGACTCTTTGCGACCCCATGAACCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTCCACCCAAACTCATGTCCATCGAGTTGGTGATGCCATCCAACCATCTCATCCTGTGTCTCCTCCTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCAGTTCTTTGCATCAGGTGGCCCAAAATACTGGAGTTTCAGCTTCAGCATCAGTCCTTCCTATAAATATTCAGGACTGACTTCCTTTAGGATGGATTGGTTTCATCTCCTTGCAATCCAAAGGACTCTGAACAGCCTTCACCAGCACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAACTTTCTTTTATAGTCCAACTCTCACATCCATACATGACTACAAGAAAGTTAGGTCGGGCTAGAGTTTTATTATTTTAGTGTTATGCAATTACTATTAAAATACTAGTTATTGTTTGTTTAGTGTTATACATACATGATTTTCCTGGAATAATATAGATTACTTTCAGTAGGGCTAGAGCAGTGTTGGAAGAAAACATTGAAGCACAGGTTATATGTCAGATTCAGTCTCCTGATTGTCACCTTTCTGTTATGATACCTTTAGTGTTAATTTGACTTTCACATGTGAAATCGTAATTAGCGTTTTCCTGAATTCATTGGTACCACATGTTGAGTATTGCGGCTCTTGTCTACTGATTATAAGGATACTGATTATGCAGTTGGTTTTCATTCTGATTTTTAAGTATTTTGATGTGTTACCCTCTGACAATTTTATGAACAGATCAAAGAGTTTCTTTCAGCATTTTTGGAAAAAGCCATTTTCTCTTTCATTAAAGGATTTCATAAAAGTTTCATTAAAGGGTTTCATAAAGGGCTTTCCCGATGGCTCAGCAGTAAGAAATTCGCCTGCAGTGCAGAAGACACAAGAGAATTGGGTTCAATCCCTGGGTTGGGAAGATCTTCTGGAGGAGGGTTTGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCGCAAAGAGTTGAACACGACTGAAGTGACTGAGCAGGCACACAGTAAGCTACCACTTACTAGCTGTGAGAACTTGAGATACTGTTTAACCCATTGTCTTATGCTGTGTCTTGAGATCAATGGCACCAAGTCTTGATTAAATGCAGATCCTTGGGCCTGATTCCAGACTTACCAACTGAGAATGTCAGGAATCCATGTTTTAAATAAGTTCCCTTTTTGATTCATATAACCTCTAGAGGTTAAGAACCACTCATTTAACCTATTTGGGCAGCAGTTTCTTCTATAAGGTGGAAGAATATAATAATACACCCTGTCCTGTAAGATTGTAAGGATTAAATGACGTAGTAACATGGCTACTCGGATGTGGTCCTGACAGGCAGCATCAGCCTTACTTGGGAACCTGTTAGAAATGCAGACTGCAAGTCCCTCCCCAAATCTGCTGAATCAGAATCGCTGGTAGAACCAAAGAATCTGTGTTTCAGTAAGTCCTCTAGGTAGTTATTAAAGTTTGTGAAAGTGTTCTAGCCTGTTAGCTTCATGAAAGTAGGGACCTTGAGATTCTTATTTACTAATGTATCATCAGTGCCTAAAATAGTGCCCAGCACAGAGTAGATAGTCACTATATTTAATCATGACTTTCATAGGTTATACCCTGTTACCAAGACGAGCACATTCACTAGTTTTTAAGGTGCTTCAATATTAACTATATTAAAAGGTTCTTAATGCCACAAAATATAAAACTAGACATTTGGGTTCCTTAGACATTTGGGAAATCTTTTTCTGCATGAGTTTGAAATAGATGGGATCGTTTGTGGTGTTCTTTTTCATAAATGAGTCTATAAAGAAGAAAGCAGAATGGCAATTCTAGCCAGTAAATATTCTTTTTTTTCTGTCCCATTTTAGTTTACAAAGAGTGAGTGATTGGTTAAATGACATTGGTAGCTCAAGTGAGAAAGTCGAAAAGATTAGAATCACAGCCAGGACTTGTTTTTTTTTTTTAAGAAAGTAACCTTTGTTATTGATAGAAGTTTCTTTATTTCATATTGTTTAATTGTGAGATACTCTTATGTCATGTTAAGAACAAGAACTAGGCAGTCTGTTAGTTTTGGGTTTAAGAATAATACATAGAAGTTTATTAACCGTGTCAGTGTTTTGCAAAGTTTTTAGTGTTGTGGAACACATAGACAGTGATATTGTATTAATACCAAACCTTGAGGTAAGTGGAAGGAGGCAACAGACAGGCACTCCAGGAGCTGCTGGCCCCGAACAGCCTTTGCTGGGCTCAGGTGGGCAGCATCTCAGCACACCTGTAACTTATTTTTGCTCACCAGTGTGTCTTAGGCCTTAGTGAGCTCTGAGCTACATGGCCCTGGGTAAGTTACATCTCTGGTTTCCAGTTTCCTTATCTGCAAAATGGGGATAATACCTACCTTATGGAGTTGATGTGGGTGTGAGAAAATATACATAAAATGTTGCACAAAACTAGGCACACAGTATGTGTTCAAGAAATGTTAAGTGCTGTTCTTACGGTTGCTAACAACAGGAATAAGCAAAAGGGAAGGGTTTGAACTGAAAGAAGTTTAAATCCATTGAAGCAATGTTTTGAGCCCTGGCTCTGTTATTTTGCATTATATTTCCATTTTTTTTTCTTTAATCTTTTCAG
Seq C2 exon
GACAAAATGTAATATCCAAAGATATTTTGGCACTAACAGCGTGATCTATAGCAAGAAAGATGATAAGTCTGTTCCAGCCTGTGAAATTTCCAAAGAAACGGAGAACCAAGGGAGTACAAAGGAGAATAAGAAAAAAGACTTGGTAAATATTATTAAGGGCATGAAAGTTGAATTAAGCACAGTAAATGTACAAACAACAAAGCCACCCAATAGAGGACAACTTAAAAGTTTGGAAGCTGCAATTCGCAGACTTCAAAAATCTCCGGAAGATGCCCCCCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015522:ENSBTAT00000048428:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154331=MRP-S31=PU(17.5=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development