RnoINT0094519 @ rn6
Intron Retention
Gene
ENSRNOG00000011839 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:RGD Symbol;Acc:1307668]
Coordinates
chr16:74489889-74496731:-
Coord C1 exon
chr16:74496382-74496731
Coord A exon
chr16:74490177-74496381
Coord C2 exon
chr16:74489889-74490176
Length
6205 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCCTTTATATGTCATTTCAGGAC
3' ss Score
9.46
Exon sequences
Seq C1 exon
TGACACTGAGTCCACCAAAGCGGAAACAGGCAGGATCCATCCAGTCAAAGATTCCGGAACGTAATTATTGGTATCTGTTTCCTACCGGAAGCCAAAAGGAGAGGAACAGTGCAGGCGGAAAACATCTCGGGGAACATTTTTGGCAGAGGGACAAACTAGCTGCTTTGTGCGCGTCTTTGAGTTTGTGTTTCCGGTTGTGCTCTTGCTTGAGTTTGTTTTTACACGATGCTCCACAGAATTCCAGCGTTTATACGTCCTCGTCCTTTCTCGGGCCTCCCTTTGTCCTGTGGAAACAGGGAGGTCTCGGTGGCTGCGAGTGTGCTACCCGCGGCTGGGTCCGGAGCTGTCAG
Seq A exon
GTAAGGTAATTCAGAGATGTTGACCCCGCCGGTCTTCCAGGACTCCCTTCCCCACTCCTTGACGCGCAGCGGTATTTTTTCCAGCCGCCTGGGGTTGAAACTGTAACCGTAAGCTCTTAGGATCGGTTCTTTTAAGTGTGGGCAAAAAGAAATCGTAGAAATACAATCAGAAGACATGGCAAACAGCTATGACAACCTGTCTTGTCTCTTGTCCTGTGGTCTTTATGATGCACGGCTCTCCTCATCATGCTTGCTGTTATCTATCTTTGTGCAGACTCCAAAAGAGAGGCCGTTCCCTTTCATTTTCTGTGTTTCCCAATAATTTTTGATAGCCTCGTTAGTGGTTCCCTCCTTTATTCCTTGCTGCAGTAAAGTGCGTTTATGTCAGTTCCTGATGATGAGCTCCGAATAAAACAGCCCTGCCATTCTGGACAATAGTATACTTCCATCAAGGAGGTAATTCAAGTATAGTGAAGATTGCATAGGCGAGCACAGAGTTCGTACTCTGAACAAAAACCTGTAGCAGAGCAAATGGTGATGTCTCGAAGTTGTAAGAGGTTCGTGGTATCCTTTCTGGGCACTCCTGTTCTCAACACCTACTGTGCTGAAGCAAGATAGCGGTGGAGACGGAAAGGATCGACTCCGTGAGGGAGCCTGCACAAACTGAGTAAATAGGATGTGGCATCTGATAAAGTATTAGACTGGTCAAAAGGAGCAACTTTTCCTGCTGATTGCCCTAGAGAATTGACAGAAGGAGAAAGATGTTTGAGCAAGATTTTAAAATATCTCAGCATTTTTAAAATGCAAAACAAACTTTTATTGTAGGAGCCTACGCACCGTGAAGGGTGAAAAAATGTGAAGTCAGTCTCTGAGGGAAGCCATGTGGTATTGTTGGTTTGATGTTGGGGATTCGAAGTCAGGGTTTCTTGCTTCATAGCCAAATGATCTGCTACTCACATGACCTAAGGGGAAGCTCATAAGATATTCTCAAAAGTTCAAGTGAGCATTTAGGACAACGGTTTTATTATTTTATGTTAGGGAACATGCATGGTTTTCCTGTAATACAGGTTATTTCTTTTGAAATGTCATAGCACCCTTGAAAGGAAACGTAGTAAAGGTTATCACATGTCAAGGTACCTTCAACATTAACTTTCAGACATAATAATTCTTGAAAGGAAACGTAGTAAAGGTTATCAGGTGCCAAGATACCTCCAACATTAACTTTCGGACATAATAGAGGATTTTTCCAAATTTGAGTTGTACCATATTGATATTATGAGAGCTCTGTGTGTTGGTCATGACAATACTTCCCTTTGTAACTTCTTTTGCACTCTGATTCTCAAGTGACTGATAAAGTAGCCTCAGGCATTTTCATAAGCAAATTGTATAGTTTCAGAGTTGGGAAATTTTTTGCACATATTAATAATCAGTTATTGTTAATTTGTGATTCAGAAAGCAAACTGCAGCTCAATTACCTTGGGTTTTAGTTAAAATGCAAATTCCCAAGCTCCGTTCCAAGTGTTCAACCCGGGAATCTCATGAATCCATTTCCTGTACACAGTAGCAGTTCAGAGTCCTGAACCCTTTGGAGCAGCAGTTTCTCTTTTTGTAAAATGAGAATGTATTTTTGTAAGATGATAAGGATTAAGTAATGTAGCTACTCAAAAGAAGTCTTCTAACGAGTGACGCCAGCATCACTTGGGACTTGTTTTTTGTTTTTTTCTCTCTCTCTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAACGCTCTACCACTGAGCTAAATCCCCAACCCGGGAACTTGTTTAAAACATAAAATTTTTAGTTTCTCCCTGAAGGTATCAAGTCAGGACCATGTGGTGGAACCAAAGAATCTACGTTTTAGCAAGTGGGATAGATAATTTCTGTGTGTTTTAAAGACTAAGAAACAGTACCCTAGCCATTAGCATCCTAAAGGTAGAAACTGTTTACTGGACCCCACTGTGACTGCTCACCATACCACACATGGTAAACCAATTGAGCCATGAAACAAGGTGTTGAAAACAACTGTAGATGAGAAGCCAAGTAATGAAGAAGGTGGCAGGTTAAAGTATTTTTTATTTGCTGATGTGTAATTGTCATCTTGGAGTCTTACTGCCTTCATCTGCTAACATAAGCCTAGTCCTAGAAGCTTCTAGCCTCTCTACAATCTTATCTAGCCCTGGAATGTTTTCATCCTCCAAACTTACTGCTGAATAAGCTCACCCTTTCGTGTTCTTTCCGATCTCTGGCTGGCTGATTCAACTCAGCTGTTCTGGCACAAACTCAGCTCCAAGGTGACCGACTCAATCTGGCTTCTCTTTTGGCCTCTGACTGAATTGCTCTTTTTGGCCTCAAACTAACTCTGGCAGTCTTTTCTGATCTTCTCTTTCTCATTCTCTGACTCATTTTATCTTCCCCTGTGTCTAGCTTGTTTCCTCTTCAGCCTGTCTCTCTATAACTGTCCTGGTAAAACTGCCTCCTCTCTCTTTCTCTCTACACTGTTATCCTAAGTAGTTTCCCTCCTTTCTCTTTTTGTGAGAGTTGGGTGTATCCTGTTCTGTCAAATCTTTCTCTGATTCATCACTTTGCCTGTCACTCAATTAGACATCGCTTTTAAACATGGCTGTTTCCTCCTACAAGCTAACTTTACCTTTATTGTTTAGGAATGAAGGTGAGTGCTAAGGACATGTCTGTGTTTCAGCCGGAGAGATTAAAGGTGTGTGCTAAGGGCAGAGCATAGTGTGATCAAATATCCTGCATCAATGGATGATTCTTGTTCAAAGTTTATTTTGCCAAGAAGCTGATTTAGGTATGGCTTATATCAGAGATGGTAGAAGTCTGGAATAGGACATCATAAAAACCAAGAGCCTGAAGAGTCTTGTCTGCCTTGAAAGACACAACAAAAGCTGCTACTAATCCACTTCAGAGGGCTTAGGTAACAGAGTCTGACATTGTGGTCTACTTGGTGTTGGCTTTCACTAGGCATCCTGGGTAAGGAAGTCCCTGCACCAAGGCCCTGAGAACCATTATGTGATGCCATGAGAATGAAGTCTGAGCTGTGTTAGAAACCCCAAGGTTTTGGAGGCCCCAAATCTGAGAGGCAGCTGCTGAAGAGAGCTGTGAGCAGAGGGAACCGTCCTGGAGAGAGCTGTGTGTTGCAGACAGCAAAGCTGGAAGGGAGGAGCCGTCTACATTTCGTGATGTCAGACATGGAGCCACAGGATTTGCTGTTTGCCCTGCTGCTTTCCAGTCTTGCTTTAGTCCACTATGTCCTAATGAGGCCCACTCCTCCCTTTTGGAATAGTAATGTGTGTTCTGTGCCATTATATGTAGAAAAGATGTAATTTGCTTTCTTTTCTAACTTTTCATTGATTCTTTGTCAGTTTCATATTATGCACCCCAGACCCACTCATCTGCACATCCCCTGTCTCCACCCTCCACCCTTAAAACACACAAACTGACTCCAAAAACCAAAGCATAGGAAATATTTCACTGTGGAAGCTATGGTATGTCACAGTGTGTCCCTCTGTCCACATATCTTCAGTCATTGTCTGGTTCAAGATCTCTGGCTTCTGTGACATCATCAATTTTAGATTATTGTGGGGACTCCTTCTGGTTTTCCTGTTGTCGCCCTGTGTGGTGGAGCTCCTGCAGCTTTGGAGCAGCAGGACTGGCCCTTTCGCACGTCCCAACCATTTGCATATCCAGACTTTGATAAGAGCCAACTCAGAGCTCTGAGTCTGGGCCTGGGTGGCAGCTGAGCTGCTCACCCACCAGCTCTCCCTTATCTGCACTGCCAGGGTGAGCTCTCCAGCACTGCTGTGGCTAGGCCACCCAATGCCACCATCAGCAGGAGGCAGGGTCGGCTGGGGCCAGCTCATTTGCATCCACGCCTCCAGAGCCAGCTCCCCTGTGCTGCCCAGTCAGGTGAAGGGCCCGCTCTCCCAAGTGCTGCAGCCTGTGAGGAGGCAAGGCCAGCTCTCCCATTCTCATGACTCTGGAGTCAGCTCTCCCAGCTATTGCAGGTGGCACAGAGGGAGGGAGAGGGCTACACACACACATATACACATACATACATACATACACACACACACACACACACACACACACACACACACACAACACCTCATGACACCTACTCCACCTCCTCCTCTTGCCAGACTAGTGGCAGGGCCAGCTCCCCAGCCCTCAGGGCTGGCCTACCTGTGCCCCCTCCATGAGAACCAGCTTTTTTGAGCTGTCCTGCAGTGGGTAATGGGCATGGCCAGTTCACCAGCTCTCATGCCCTCCTGACTGTCACAGGTAGTGAGTGGTGGTGACCGGGGCATCACCCCATGCCAACACCACCTCATGGCAGATGAGTGAGTGCTGGAGCCAGTCTTCCATGTCCTCACCCTCGGGGCTGGCTCACCTGCACCCCCTGGACCAGGGCCAGCCTACTGTGCTGCTCAGGCAAGGTGCAGAGCCCGCTCTCCTGAGCAGTGCAACCAGCAAGGGGCAGGGCCAGCTTACGCCCTGTCATGACCCTGGGCTCAGCTGTCGACTGCCTCAGGTGGCCATGGACAAGGCAGCCTCCCCAGGCCACATCATGGCAGACAAGTGGCTGGGCCAGCTCTCCTGAGTGCTGCAGGTGGTAGGGGACAGGGCTAGCCTTCCTGAGATCATAACCCTGTGGGAAGGTTTCCCGACTGCTGGGGTGGGGGGAGCACATCACCTCTGTATCTGTGCCCCCATGGCAGATGAGTAGCAGGGTCAGCACTTCCACATCTACCACCTCGGGCTACCACCCACACCCCTGATGCCATGAGCAGCTCCACTGTGCTGCCAGGGGCCTGCTCTCCAGTGCTTTCACCTATGAGAGGTGGGGCCAGCTCTCTAGAGCACTGAATCCGATGAGGAGCAGGGTCAGTTCTGCACAGCCCCTGGACATCCAGATGGTCCTGGCTGCCCTGACCAGGGAGTCCAGTCTCCATGTTCTATAGTGGTAATATGAGCTAGGGACATGGATACCGACCCCCAGCGCTGTGTAGACATGGACTCAGACATGGCTCTCGGTGGCAGATTGGGCAGGAGTCTCACCATGGCCTCACTCATAGCTCCTCTCCACCCTGAGTCTCCAGTTCATCTCTCTGTAATGCGCAAGCTGCTCCTCTTCCCTTTCTCTCCCTTCTGACCAGCACAGACTCGCACTTTGTGGTGAATGATTCGCACTGCAGGCTGGTCACACTGCTGGCAGCTCCCTGGGTGACACCCTTAGTCTGTGCTCTGTGGGAGGTGGCCTCCCTCAGTGGGCTAAAGGGCAGGTCTGTGGGGCATGGCGGTCCATAGTTCTCTGTCTGCCTTCCTCCTGTACTGCGATGCCTGGATTGCATTGGATATGATTTGATTTGATTTTTATGAGTCCTAGGCATAAGACACCAAAGATTTGGTCACCAAAGATTCTCAAAGAGACTTTGGACTTTAAAGCAGTGTAGAAACCATGAAAGACAACGGGAACTTTAAAAATTGGACTATATACACTTTGCATTATGATATGGCCATGAGCCTGTAGGGGCCAGGGAATGGAATATAGTAGTTTAGAATGAGAATCTCCCTGCAAGGCCCATATATTTGAAGACTTGGTCCCCAGTTGGCTGCACTTTGAGAGAGTAAGGCCTGTGCCACTTGCAGCTTGCTCTCTCTGCCTTGTTTTGCATTTGAGGACGCCGTCACCCAGCATGCACCTGCTGGCTTGCCTGCCTCTTTTCTCTGACTCTTCTTTGTCTGTTGGCTGTCCTCCCTCTGGAATCAAAAGTCCAGACCACTTCCTTCTTCCATTAATTGCTTTTAGTCATGGCGTTTATCTTAGCCACAGGGAAGTCACTAAGACACCGGCGTGGTTACTTCCGGGTTTTCAGTTTCTTAGCTGTAGGAGGAGGATAATGCTGACCTTTGGAGTTGATATGGGTGTGAAAAATTGTACACAAGTCTTGTCCAAGCAAGGCCCAGAGTATGTGCTAACACAGGCTGCATGGCTTCCACTGTGGTAGTTAACAATGGTGGAGAGCAAAAGGAAACGGAGAGGGTTTACATGGAATCCTTTTAAATGTAGAAGCAGATTTTTCTGTTAATACTTTGTTATTTGTGAATTATATTTTTCTGCGCTTCCTTTATATGTCATTTCAG
Seq C2 exon
GACAGAAAATACTATCCAAAGACATTTCTGCACTAGCAGATCCATCTGTAGTAAGAAAGATGACCAGTCTGTTCCAGCCAATGAAACTTCCCAGAAGGCAGCGGAGAGCCAAGGCGAGGGAAAGGAGACTTTGAAGAAAAACCTGCTGGACGTTATTAAGGACATGAAAGTGCAACTGAACACAGCAAATGTAAAAACAACAAAGCCGCGTGGCAGACAACCTCCTGCCCATCTGGAGACCGCAGTCGGCAGGCTTCAGAAGGCCCTGGGAGAACCTCCAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011839:ENSRNOT00000015790:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.749
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154331=MRP-S31=PU(17.6=53.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]