MmuINT0100964 @ mm10
Intron Retention
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:22411361-22415003:+
Coord C1 exon
chr8:22411361-22411584
Coord A exon
chr8:22411585-22414715
Coord C2 exon
chr8:22414716-22415003
Length
3131 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCTTAATGTGTCATTTCAGGAC
3' ss Score
9.75
Exon sequences
Seq C1 exon
AACATCTCGGAGGACATTTTTGGCAGAGGGACGAACCAGTTCAGCTGTGCACTTCTTGGCGCTTGTGCTTCCGGCTGTGCTCTGGTTTGAGTTTGTATTTACACGATGCTCCACAGAATCCCGGCATTTCTACGCCCTCGCCCTTTCTCGGGCCTCCCTTTGTCCTGTGGAAACCGGGACGTCTCGGTGGCTGTGCTACCCGCGGCTCAGTCCGGAGCTGTGAG
Seq A exon
GTAAGGTGGCCCAGAGCTATTGGCCGCGCCGGGCTTCCAGGGCTCGCTTGCCCTCTACTTGCCTTGCAGCGACATTTTTTTCCAGCCCCCGGGGTTGGATACTGTAAGCGTAGGCTCTTGGAAGCGGTTGTTCGAAGTGTGGGTAGAAAGAAATCGTAGAAGGACAAGGCAGCTTGTCCGATGCCGTGATGAGTGTGGCAAACAGCCATAACAACAAGTCTTGTTTCTTGTCCCGCGGTCTTTCTGCTGCAAATCTATCCCTCATCCTGCTTGCTGTTACTTCTCTTTGTACGGACTCGAAAAGAGAGGTCGTTTTCTTTCATCTTCTATGCTTCCCAAGAATTTTTATAGCCTCGTTAATGCTTCCCTCCTTTATTCCCTACTGCATTATTTAAAGTGCGTTTATGTCAGCTACCGATGTTGAGCTCCGAATAAAACAGTCCTACCATTCTGGACAGTAGTATACTTCCATTGAGGAGGTGATTCAAGTAGAGTGAAGATAGCATGGGTAAGCACAGAGTTCATTCTCTCAACAGATAACTAGAGGAGAGCAAATAGAGACATCTCGAAGTTGTAAGAGGTTCATGGTATTCTTTCTGGGCACGCCTGTCCTCAACGCCTATCTCAGTGCTGAAGCAAGATAGCAGTGGAGATGGAAAGGATCAACTCCGTGAAGGAGTCTGCACAAAATAAAGTGAACAGGATGTGACCTATAATGAAGTAACGGAGTGGTCAAAAGGAGTGACTATTTCTGCTGATTGCTCTAGAGAACTGACAGAAGGAGAAAGATGTTTCAGAAAGATTCTAAAATGTCTTAGCATTTTAAACTTGCAAGATGAATTTTTATTGTAGGATCCTACACTGCAGGGTGAAAAATGTGAAGTCAGTCTCTGAGGGAAGCCATGTGGTGCTTTTGGTGATGTTGGGGATTTGAATTCAGGGCTTCAAAATTAGTGGAAGCTCATGAGGTATTCTCAAAGAAAAAAAAAGCTCATATGAGCATTTAGGATAATAGTTTTATTACTTTATGCTAGGGAACATTCATGGTTTTCCTGTAATACAGGTTTTGTGTGTGTGTGTGTGTAGTGTCAGAGCACTCTTGAAAGGAAACGTTGTGCTAAATAAAATTAATATGTGTGACTTGTTCTTCTGATTTTCCTATGTCAAGGTACCTTCAACATTAACTTTCAGAAATAATAACTGTTTGAATTGTATCATATTGATATCTCAAGAGTTCTGTGTATTGGTCATGACAGTACTTCCCTTTGTAACTTATTTTTCACTCCGGCATTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACGCGCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAAGCGTGTGCCACCACGCCCGGCTAACTCTGGCATTTTCATAAGCAAATTATATAGTTTCAGAGTTTGGGAAAATTTTTTTTGCATTAAAGTGTTCCAAGCCTGGGGATGCCAATTGCTAACTTTGACAATTTGATACATATTAATAACACATTATTAATTTACTATACTAATAATAATACACTATTAATAATATGTAATCCAGAGAACAAATTGCAACTGAGTTATCTTGGGTTTTAGTTAAAATGCAAATTCCCCCACTCCATTCCAAATGTGAAAACTCGTGAACCCATTGCCTGTGCGCTGCAGCAGGTCAGAAGTCCTACGGCCTTTAGAGCATCAGCTTCTTTTTTTTATAAAATGAGAATGTATTTTTGTAAAATCATAAGGATTAAGTAGCATAGCTATTCAAAAGAAGTCTTCTAACTAGTGGTGCCAGCATCACTTGGGAACTTGTTTAAAATGTAAAATTTTTAGTTCCTTCTTGAAGGTGCTAAGTCAGAATTATGTTGTGGGACCAAAGAATCTACATTTTAGCAAGTAGGATAGGTAATTTCTGTGTGTTTTAAAGACTAAGAAACAGTACTGTAGCCATTAGCATCCTAAAGGTAGAAACTGTTTACTGGGCCACAGTCTGACTGCTCACCATACCACATGATAAACCAATTGAGCCATGAAACAGGATGTTGGAAGCAACTATAGTTGAAAAGCCAGGTAATGAAGAAGATGGAGTGTAAAAGTATTTTTTATTCGCTGATGTAATTGTCATCTTGGATGCTTCTGCCTCCATCTGCTAACCTGAGCCTAGTCCCGGAAGCTTCTAGCCTCCATACAATCTTATCTAGGCCTAGAATGGATATGATTTGACTTGATTTTTATTATGACACCTTTGGTCACCAAATATTCTCAAAGAGTCTCAATCTTCACCAAAGATTCTCAGAGAGACTTTGGACTTTTAAACAATGTGGACACCTGAGTGAAAGACTAAGGGAACTTTAAAAATTGGACTGAATATACTTTGCATTGTGATACGGTCATGAGCCTGCAGGGCCCGAGGGTGGAGTATAGTGGTTTAGAATGAGAATCGCCTTCTGAGGCCCAAATATTTGAAGACTTGGTCCCAGTTGCTGCACTGTTTGGGGAGGAGTATGTCACTGGGGTGGGCTTAGAGAGATTAAAGACCTGTGCCACTTCCAGTTTGCTCTCTCCGCCTTGTCCTGCATTTGAGGATGCCATTGCTCAGTTTTCTGCACCTGCTGGCAAGCCTGCTTCTTTTTGTCTGATGGCTGTTCTCCCTCTGAAATCTTAAGTACAAATCACTTCCTCCTTCCATTTATTGCTTTTAGTCTTGGTGTTTTATCTTAGCCCCAGGAAAGTCTCTACACCCGGCATGGTTACTCCTGTGGTTTTCTGTTTCCTTATCTGTAAGGGGAGGATAATGCTGACCTTTGGAGTTGACATGGGTGTGAAAAATTGCACACAACGATTGTCCAAACGAGGTCCAAAGTATGTGCTAATACCTGATGAATGGCTTCCATTATGGTTGTTAATAATAGTGGGAAACAAAAGGAAATGGAGAGGGTTTACATGAAATCCTTTTACATGTAGAAGCAGGTTTTTCCGTTACTACTTTATTATTTTTGAATTATATTTTTCTGTTCTTCCTTAATGTGTCATTTCAG
Seq C2 exon
GACAGAAAATAATATCCAAAGACATTTTTGCACTAGCAGATCAATCTGTAGCAAGAAAGTTGACCAGTCTGTTCCAGCCAATGAAATTTCCCAGAAGGCAGCAGAGAGCCAAGGCAGGGGAAAGGAGACTTTGAAAAAAGACCTGCTGGACATTATTAAGGACATGAAAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACGTGGCAGAAAACCTTCTGCCAGTCTGGAGGCTACCGTTGACAGGCTTCAGAAAGCTCCGGAAGACCCTCCAAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533:ENSMUST00000033934:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154331=MRP-S31=PU(17.6=53.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types