BtaINT0095720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41641037-41641401:-
Coord C1 exon
chr29:41641338-41641401
Coord A exon
chr29:41641155-41641337
Coord C2 exon
chr29:41641037-41641154
Length
183 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTCTCTCTTTCTGTCTCCAGGAC
3' ss Score
12.81
Exon sequences
Seq C1 exon
GGGGAAATGCAGTGTGACCCTCTTGAATGAGACAGATATCTTGAGCCAGTACCTGGAAAAGGAG
Seq A exon
GTGAGAAAGAAGTGTTGGGAGAAGAGGGAGGGAAGTGGGTATTGCCCCGAAAGGCAGGAAGAAAGTCTGACTGGGATGAGGTACAGGTTGACAGGCTGCCTGTCTTGGGAACTCTGGATAACCCCCGTGCCCCCTGCCTATGAGGACTGCTACCCTGCTTACCTTCTCTCTTTCTGTCTCCAG
Seq C2 exon
GACTGCTTTTTTTACTCACTGGTGTTTGACCCTATGCAGAAGACACTTCTAGCTGATCAGGGAGAGATCCGAGTTGGTTGCAAATACCAAGCTGAGATCCCAGATCGCCTGGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865:ENSBTAT00000015748:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (disopred):
C1=0.091 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(14.9=100)
A:
NA
C2:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATGCAGTGTGACCCTC
R:
CCTCTGCCAGGCGATCTG
Band lengths:
181-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]