MmuINT0101444 @ mm10
Intron Retention
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:8946006-8946384:+
Coord C1 exon
chr19:8946006-8946069
Coord A exon
chr19:8946070-8946266
Coord C2 exon
chr19:8946267-8946384
Length
197 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTCCTCTCTTCCTCTTCAGGAC
3' ss Score
13.58
Exon sequences
Seq C1 exon
GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG
Seq A exon
GTGAGGAGCTGTTGGGATAAGAGGGAGGTGAGAGAATGTTGCCCCTAAAGGCAAGTGAGGTGGTAAAGGGGCCACGGACCTCACAGCCGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTCTGTGTCTGGAGAGACCTTACTGTCCATGCAGATTCCTTCCCACTAACCTCCTCTCTTCCTCTTCAG
Seq C2 exon
GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646:ENSMUST00000096240:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.182 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(14.9=100)
A:
NA
C2:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCAGCGTGACTCTCTTG
R:
CCTCTGCCAAACGATCTGGGA
Band lengths:
178-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types