DreINT0098364 @ danRer10
Intron Retention
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17677445-17679074:+
Coord C1 exon
chr7:17677445-17677508
Coord A exon
chr7:17677509-17678956
Coord C2 exon
chr7:17678957-17679074
Length
1448 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGTGTTTTTTGTTCTGCAGGAC
3' ss Score
11.27
Exon sequences
Seq C1 exon
AGGAAAATGCAACGTCACGCTTTTAAATGAGACTGATGTTTTAACTGGCTACTTAGAGAGAGAG
Seq A exon
GTAAGTGTTCTCCCAGAGTACAAGTGCACTCACCGTGCAGTTTTTCAAAGTGTTACAAAGCTCACAAAAGCCATAACGAAAAAAAGGCGGCTTCTTGTAGAGTGTCAGAGTAACAAATGTTTTCAGTCGTTGCAATTGGAAAATCTCGATTATTCCAGCAAATAGAGATTTCTTAGCTCTTCTAAAGTTAGACTATTGGTATTGAGTTCTCTGAAAACATGGAACCTTTTTGTGATTTAATGCAAAAACAACTCTATAATGCAGGGTCGTAAAATTTCTTAAATTCACTGAAATATAGTATTGTAGGTCTTGTATCATTTTAAACATGCCTTAGTTTTCCTCTGTCCAAGTAAAGCTTCTCAATTGGGCTGAAAATCATCTAATCAACAATCCATCTCAAGAAAACCTTTTTTATGAGAATGTTTTTTTATTGCAAAGAGATAAAATTTACAATAGCTGTTCAACATTTTTGACAGCAATTTCTATAAATTAAATTCCCCTAAACAAGGAAAGAAAACCAAAAACAATTGCACATTCCTCATGATAATAGCAGAGCAACATATCACTTTACTTGATGCATTATATTCAGAGGTAGCCAAAAAACGCATTCAACCGGATTGCTCTAATAGTGGGACCATACTGTACATGTGGTTAAATTTTCAATGGTCGCTAAACATCGCCTGCTCTTTGCCTACTGAACTCATTCATAACCCAGCAGCTGATGATTTAAACTTTGTTGCTGATAATCTTTTGTATTAAAGGCGAAAATATTTCATAAAGTAGAATGATCTCTCTCCAGTCCTGATGTTTAATCATTTTCTTTTCTTTTTTTAATAATTATAATACAAAATAAGGCCATTTATTTAAAATGAGATTTTTGAAATATGCCTGCTTTAAGTCTGAAAAATGAACTGACACAGTTTCAACTTCAATTTACTAGAACTTCTATGTTAAGCTGCTTTGACACTATTTACATTGTAAAAGCGCTATAGAATTAAAGATGACATTATACTCAATCAATTTGGACCAGAAGCCAACAAATGTTTATTTTTGATCATTTATTTAATTGTCTCCATAATAAAAACATTTTTAACAATGTTAAACTTGTGATTAAAAATATTATGTTGGATAAAAAGTGTGTACAACTAGAGTTTTCTTGTTTTGTCTTGTTAAATTATGTCGCTAAGAAAAATACATTTTTTTTTTTTGTTTTGTGGCAACTGACCGGGCCACTAAAAATAATCCTTAGTGTTTAGCCCTGTTTAAGTTTAAAATTTCATTCAAAATGGTTTTAAAAGGGTCTTCTTGATTAAACCTGCAGAAACCCTGATATTGAAAATATTTTACTTTTGAATTTTTGTAAGACAACTTAACACCTTTTATTTGTTCAAAATGACTAAACGTTCATCACATGGTTCTGTTTCTAACATGTGTTTTTTGTTCTGCAG
Seq C2 exon
GACTGTTTCTTCTACTCTCTGGTGTTTGACCCAGTGCAGAAAACACTGCTGGCTGACCAGGGGGAGATCAGAGTCGGATCTAAATACCAGGCAGAGATTCCGGACAAACTGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031:ENSDART00000147564:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(14.9=100)
A:
NA
C2:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAATGCAACGTCACGCT
R:
CTTCAGCCAGTTTGTCCGGAA
Band lengths:
182-1630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]