BtaINT0095721 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41640656-41641154:-
Coord C1 exon
chr29:41641037-41641154
Coord A exon
chr29:41640759-41641036
Coord C2 exon
chr29:41640656-41640758
Length
278 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
ACCACTTCCCCACTCCCCAGGAG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTTGACCCTATGCAGAAGACACTTCTAGCTGATCAGGGAGAGATCCGAGTTGGTTGCAAATACCAAGCTGAGATCCCAGATCGCCTGGCAGAGG
Seq A exon
GTATGAAGCAGGAGAGACTGGGTTATGACCACTGGGATGTCTTAAGATCAAAGTCTCTGAGTGGTGGGCCTTGGCTTTGTGTGGTGCACAGTCTGCGTGGCTCTGTGTTAACAACCCGGGCAGAATGGGACCTTAGGAACCTGAAGGGGGCAGACGGGCACACTGGGAAGAGAAGTCTGAGAGTTAAGATGGCTAATAGCGTCCAAGGAGGAGATGAGGTGTTATTGTGTCAAGGCACCTATTTTTCTCCTGGATGATACCACTTCCCCACTCCCCAG
Seq C2 exon
GAGAATCTGATAATCGGAACCAACAGAAGATGGAGATGAAAGTCTGGGATCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865:ENSBTAT00000015748:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.075 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(61.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCACTGGTGTTTGACCCT
R:
GGGCCACCACGAGAAACTGAT
Band lengths:
212-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]