RnoINT0094985 @ rn6
Intron Retention
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225144797-225145289:+
Coord C1 exon
chr1:225144797-225144914
Coord A exon
chr1:225144915-225145186
Coord C2 exon
chr1:225145187-225145289
Length
272 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GCCATCGCTTGCTTCCTCAGGAG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTCGACCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG
Seq A exon
GTAAGCAACGGAACAGAAGTGCTTGAACATGAACGTTTCTGTCTGTGGCGTGATTTGGGGTACCGGTGCACAATCTGCTAGGTGTTGTGTTGTGACTTTGACAGAATGAGACTTAGGAACCTGAAAGAGACAAGTGGGCACAGCTGGGAGGGGATTTCTGAGGTCTGAGACCTGATGGACTCCAAGCAGAGAAGAGGAAGAAGAGCCATTGTGAGTGACTAAGAGCTCAGTTATTTCCCTCTCTCCCTCTATGCCATCGCTTGCTTCCTCAG
Seq C2 exon
GAGAATCGGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATCGATCAGTTTCTCGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913:ENSRNOT00000027141:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(61.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCACTGGTGTTCGACCC
R:
GGGCCACCACGAGAAACTGAT
Band lengths:
212-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]