MmuINT0101445 @ mm10
Intron Retention
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:8946267-8946750:+
Coord C1 exon
chr19:8946267-8946384
Coord A exon
chr19:8946385-8946647
Coord C2 exon
chr19:8946648-8946750
Length
263 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TGATTCTGTTGTTTCCTCAGGAG
3' ss Score
9.43
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG
Seq A exon
GTAAGCAACAGAACAAGAAGTGCTTGAACATGAAAGTTTCTGTTGATAGCTTGATTTGGGGTACCAGTGTGGAATCTGCTAGGTGTTGTGTTGTGGCTCTGACAGGGTGAGACTTAGGAACATGAGAGAGACAAGTGGGCACAGCTGGGAGGGGAGTTCTGAGGTCTGATAGACTCCAAGCAGAGCAGAGGAAAAAGAGCCATTGTGAGTGACTATGAGTTATTTCCCTCTCTCCCTCCGTGGTGATTCTGTTGTTTCCTCAG
Seq C2 exon
GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646:ENSMUST00000096240:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.025 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(61.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCACTGGTGTTTGATCCTG
R:
GGGCCACCACGAGAAACTGAT
Band lengths:
212-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types