BtaINT0096144 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:19008507-19010281:+
Coord C1 exon
chr27:19008507-19008707
Coord A exon
chr27:19008708-19010140
Coord C2 exon
chr27:19010141-19010281
Length
1433 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCTTATTTTCTTTATAACAGAAT
3' ss Score
7.41
Exon sequences
Seq C1 exon
ATACGGCAACCTAGATGGTGATCCCAGAGAAATCTCTCCAGTTATAGACCAGTTCCTTGAGTGCGTCTGGCAGTTAATGGAACAGTTTCCCTGTGCCTTTGAGTTCAATGAGAGGTTTTTGATTCACATTCAACATCACATCTATTCCTGCCAGTTTGGGAACTTCCTATGTAATAGCCAGAAGGAGAGACAAGAACTCAA
Seq A exon
GTAAGTGTTTTGATGTTTAATTTTTATGTAAAGATTTTGTGACTGAGAGTTTCAGGTGGTCTTTCACAATTTTGAAGACTGTTTTAGTTATACATCTTCACTCACAGAGTAACGATTTTCCTGACATCACTTTAGAGGTTTAAGGCCATCAGCTGACAAAGACAGGCACAAGTCCATTTTGCCTAGTTCCTGCCTAATGTCCACAGGTAGATAGGTAAACTTCACACACTGATATGGAAAGGAAGCTTCTTGAGAGTCAGGGAAAGTGATTTTTGCATTGAAAAGGAAAAAGTTACATAGCTTTGGTGGATATATTCTCATAATAGTTGCAAAATATAGTAGTCTCTCCTTATCCATGGTTCCACTTTCCGCAATTTCAGTTATCTGAGGCCAACTGTGGTCCAAGATTAGATGGAAGATTCCAGAAAAAAATAATTCGTAAGTTTTAGATTGTGGGCCTTTCTGAGTAGCATGATGAAATCTCGCACTCTCCCACTCTATCCTGCATGGGATGGCCTGTTACTTAGTAGCTGTCTCAGTTATCACAATGCTTGTGTTCCAGCAACCCTAAAGTTCAAGAGTAGCGATGGTAGCAATTCACATATTTTTTATTATGCTTAATTTATTTTATGATAGGCAGGTATGTATAGGAAAACACTGTATATACAGGGTTCACTACTATCCATAATTTCAGGCAACTACTTGGAGTCTTGGAACAAATACCTCATGGATAAGGGTGGACTGCTATACTGCTTTAACTGAGAGGGGAAAAAATAGATGAAATGTGGACTTTTGAAAAAGTCAAAAGCTTAACAGCTAAGTGACTTAAGAATTGCAAATGAAAGAACATTTTTGAAATTTTTATAAAAAAATTAATGTGGTATATAGAGTATCAGATTTAATTTTGCAAATGGTCAGTTCAAATAAAACTGACTCCAGTTTTATCCTGAGTGGAAAGAACATGACTTTTTCTAGTAGATACAATTCCTGATAAATGGTACATCCTGTAAACTCACCTGTTTTCTTAGGTATTTTGTGATTTGTTGTGATAGATTAGCAAAAGGGACAAATGTCATAGGAATACAGTCACGATTAAATGAGAGAAAATATGTGAAGCATTTAAGTAGTACCCAGCAAACAATAATAATCCAGTGACTATTTGGGGGAAAATTTCAACAAAACGCATGTGTGGTTTTATTTTATACTCAGAGGGACTGGATATCTGAAGGCCAAGATGTCCCCAGAGAGCAGGGGAGTTGAGACTCCTCCAAGTGCTCTTTTGCTGCTCCATGAAGACACAAAAGACTGTTAGTTTCCCTGCTGAGAACAGGGACCCGTGATGTAACAAGTTTTGATTCCTTTCCAGCTTTAATATGTCTACTATTTCTAAGAACCAAGGGAAGTCATTTTAAGGCTTATTTTCTTTATAACAG
Seq C2 exon
AATTCAAGAAAGAACATACTCTTTATGGGCTCACCTGTGGAAAAATCGGGCCGACTACTTGAATCCTCTGTTTAGAGCTGATCACAGTCAGACCCGGGGAGTCCTTCATCTCCCCACAGCGCCGTGCAACTTCATGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372:ENSBTAT00000055365:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
PF093326=Mcm10=PU(7.9=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCCAGTTATAGACCAGTTCCT
R:
TTGTACATGAAGTTGCACGGC
Band lengths:
310-1743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]