DreINT0098742 @ danRer10
Intron Retention
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30069091-30069527:+
Coord C1 exon
chr14:30069091-30069291
Coord A exon
chr14:30069292-30069392
Coord C2 exon
chr14:30069393-30069527
Length
101 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACT
5' ss Score
6.77
3' ss Seq
GTTTTCACTTTTTTCTGCAGCAT
3' ss Score
9.74
Exon sequences
Seq C1 exon
ATGCGGTCACCTAGACGGAGAAGCCAAAGAAGTGTCTCCTGTTCTAGACCAGTTTCTGGAATGTGTATGGCAGCTTATGGACCAGTTTCCCTGCGCTTTTGAGTACAATGAGAAGTTTCTAATCAGCATCCACAACCACGTTTACTCCAGCCACTACGGCAACTTCATTTGTAACAGCCAGAAGGAGAGGAAAGATCTGCG
Seq A exon
GTAACTCTCCCGTTTGTTTAATAATATGATGAAAAGTAGTTTCTGTTTGTTGTTTTGCAAGACATTAGAATCTTTTTTTCTGTTTTCACTTTTTTCTGCAG
Seq C2 exon
CATCAAAGAGAAAACTCACTCCATATGGCCTTATTTAATGGAGAACAAGCTGGACTTCATGAACCCTCTGTTCAAACCTGATCAGATCCAGAATCAGGGACTTTTAAGGCCTAGCACTGCCCCCTACTGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101:ENSDART00000053925:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(19.2=97.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCCCTGCGCTTTTGAGT
R:
AAACAGTAGGGGGCAGTGCTA
Band lengths:
250-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]