RnoINT0095408 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54850112-54851507:+
Coord C1 exon
chr16:54850112-54850195
Coord A exon
chr16:54850196-54851366
Coord C2 exon
chr16:54851367-54851507
Length
1171 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
3' ss Seq
GCCTTTCTTTGAAATAACAGGAT
3' ss Score
5.39
Exon sequences
Seq C1 exon
TGAGAATGGAAAAAGGGTTCACAGTTCCTGAAGGAGGCTCCCGAGGTTGAATGCTGGCCTTTGATGAAGCTATAGCATGCCTGA
Seq A exon
GTAAGAATGTGCACACAGCAGAGCATACCCTTTAGTCTCACTCATGTTTCTGGATAGTCTGTGGTCTGTTGCACTAGGATAGCTAATCATAATGGCTTTCAATACTGGCTTTTCTAACTAGCTGTGAGATTTGGAGACTACTCTCCATTCATTTATCTCTTCATCCAGAAAATAGGATATAATAGGAATTGTGGATTAAATAAAAACAAAACAAAACAAAAAGATATAACCAATGTTTCTTTAAGTACTCAAAATAACCAAACATTTTGTCAAGGCTAGTACAGAGAGTAGTGGTATGGAGACTATTATAAAAATGTTTCTTCACATGAAACTCAAGACGGATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGTAGGGAAGGGAGAGGCAAAGATTAAAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCATCCAATTAGATAAGATGGATGAAGCAAAGAAGTGCAGGCTGACAGGAGCCGGATGTAGATCGCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAACTGAGAACGGGACCCCCGTTGAAGGATCAGAGAAAGGACTGGAAGAGCTTGAAGGGGCTTGAGACCCCTTATGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCCAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAGGTAGCATTGAATATCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAACCCCCAGTGAATGTGATTGTTGGGGGGAGGGCAGCAATGGGGGGAGGATATCACCCATAAAGAAGGGGAGGGGCAGGGATTAGGGGGATGTTTGCCCGGAAACCGGGAAAGGGAATAACATTCGAAATGTAAATAAGAAATACTCAAGTTAATAATAAAAAAAAAAAGTTTCTCTACCATGCCAGTGGTAAAGTCACTGATAAATACTAATTCTTTTCCAGCTTTAATGTAAAATACTTGTTATTTAGAAGAACCAAGATTGGTCCATTCATTCATTCATTCATTCATTCATTTATTTATTTATTTATTGCCTTTCTTTGAAATAACAG
Seq C2 exon
GATTCAAGAAAGAACTTACTCTTTGTGGTCGAACCTGTGGAAGAATCGGGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATACAACTTCACATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF093326=Mcm10=PU(7.4=20.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATGGAAAAAGGGTTCACAGT
R:
TATGTGAAGTTGTATGGAGCTGT
Band lengths:
222-1393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]