BtaINT0096151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18983575-18993009:+
Coord C1 exon
chr27:18983575-18983709
Coord A exon
chr27:18983710-18992876
Coord C2 exon
chr27:18992877-18993009
Length
9167 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTTTTGCTGCCCACTGCAGCTT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCCTCCATCTGCCGGAGCAGCCAGCCCCTGTCTGGCTTCAGTGCCCGCTGCCTGGAGGATGAGCAGATGCTGCAGGCCATCAGGAAGGCCAACCCGGGAAGCGACTTCCTTTATGTTGTGGACACTCGGCCCAAG
Seq A exon
GTGAGTGTCGCCACGCCGATGCATGTCTTTGCAGTCTTTGCAAAGAGATGAGGCCTCGCCCGCTCAGGGAGCGCCGTCTGCAGAGGGGCCGTTTCCTTCTGCACAGTGGCTGCCCTGCCCGCCTGCTTCCCGGGGCCCTGAGCCCTGGGGGGTTGACAACGGCAGGGACTTTGGATCTTTCCCGGCTCCGAGCCTCGTGCTCGGTACATAGTGCACACGACAAAAGTGTGGTGTGATGCTGGAGGTCGCTCTCCTGAACACGCCAGATTGTTCTTTGGTTTGTTCACAAAAGGACCTTTTCTTCTCTAACAGTATGAAATTCACTGTGGAATCCGCGCAGTTCAGAGTTTGTGGGATGTTCACCTCTTCCCTTGCAAATTCAGCTGGTAGTTAATTCCACTATGTCTATGACATGGAACAATTTCCAAAATGGAATGTTAAGTTTAAAAAAAAAAGAAGTTACAAATTAATATGTATATTACTGCGTCTATGGAAAACAGCAAACTATAGGTAGGTAAAAATGTCAGTTAAAACAGAAAGATCTGGAAGGATAAGCACTCACCTAGTAAGAATTCCAAGAAGAAGATGAGCATGGAATATATAGGATAAAATTAGGTGACAGAGAGATATGGCCATTAATTCAACACATTTGGCATTGGAATTTCTTGCCAGTTATGAATAAAATATACCTGGATCTGTAAGTGATGAGAGAGAAGGGTACATGTTCTTTCTCCATGTGGGTGCAGAACAGTGTCTGAGATGTACTGTGAAACAGCAAGAGTGAGCTACAGAAATCTATAATGTGATCCCATGTATGTAATAGTAATTATATTATTAAAATTATACATTATTCTATGCACTGAAAAAAGTTTAAGGGTATATATATTAAACTGTTAACAGTGGTTTTTGGTGTTTTTTTTTTTTTCCCCCTGTGGGGTGAGAGGAGGATTTTGACAAACTTTTCTTTTATAAATTATAGTGTGAAAAGCAAATTTAATCATAAAAAGGTTGAAAGAACATAAGGCCTTCAAAATGTTAAACATCAGTTCCCATGGAGTGGGTAATTGCAGACATGGGTCTGTACTCGTGTCTGATAAGAGGAATCACGGAAACTGCATACTACCCATTGTGTGGCTGACCCAGACCCTGGCAATTTTGCTGCTTCTCTGAGCCCCATGTCGCCAAATATTGTGATGCACGGTCTCAATCATGTAGTTAGATGTCTTCCATCACTGACCTCAGAACAGGCGGGGGCTGTGGGGCAGCCGTGGGGGGCAGGGTGGGGTGGTGAGGAAGAGGTCCTCTTAGACACCAGTAGAGTAGACCAACCACGCAGATCAAGGACACACCAGATTCCAGCCGGGTCACATTCTGGTAGATGACAGGTAAAGGATTCCCTTCCTTTTAGGAAAGTCCTCAAAGCACAACAGGGAAGAGGCTTTGGACTGGGGGAGAAATAGTTTCTCTGCTTGAGGATTTTTACTTGAAAGATGCTGGAAAATCTCTATCTTTTACAGCAGCTCTCTTTCAATGTGTGTTTTTCTCTCTGCTTCATCGTCCTTCTCACCTTGACTTTCCCTCGTCTTCATTCTGCCTCTTGTGTCAGGTTAGTGGAGCTGCTCTGAGTTTCTGAAGTCAGAGACGACTGCACAAATGCCTGTCTTAGAGACACAGGCTAAAGACAAAATAAGAAGAGGGCAGGGACTTCCCTTGCAGTCACTGGTTAGGACTCTGCGCTTCCATTGCAGGGACATGGGCTTGATCCCTGGTTGAGAAGATCCCCTGGAGAAGGCAACGGCTACCCTCTCTAGTATTCTTGCCTGGAGAATTCCATGGACTGAGGAGGAGCCTGGTGTGCTACAATCCATGGGGTTGGCAAAGAGTCAGACACGATTGAGCAACTTTCACTCTGATGAACTAAGATCCCGCATACCATTTGGCCAAATAATAGCAATAATAATAAAGGGATGGAGAGACAGGGGCTTTAAAGTGAATTAGGTTGCTCTTCTCCGATTCCGTTTTCGCAGGTTTAAATAGAGGCAAACAGATTGGCCTGCTGATTTAAGGGCCAACGGTCCAAGTGTGTACTATGTTATGTAAACCTTCTGGGCAATGTGGCAGCTGTTGAGCCAGACGCAGTCCAGATTTAAAAGAAATTAATCCAAAGGATTTGATTTGAAGGGTATATTTAGCACTCCGTGTGTTTGCTCTCGGCGATAAGAAGTTGGAGGCGGATCCATTAAAGAAAATTGGTCGTGCTGTCTTCCTATTTGCCCGGGCACACACACACCTTCACGGGAGTTTTAAACTGTTTGCTTAGAGTGTTCGTTCTTTTAAAGATCGTGTCTGTTGATTTTTGTTTCTCGGTAGCCAGGAGACCGGCTCCATGTTTGCTGTGGGCGGTGGGCATGGCAAATGGGCCCTAGCTAGGTTCGCTTGCAGATTTAAATGAAATAGAGAAAGGTCAGAAGTCGTTCTTGTCCTTGGAGTGGGAGTCACCTCAGATGCTGCCTGAATTGCTCGTTGGTATTAGAATCTAGGGAGGCAAAGGCCATGAGGACCTTAGCTCAACTTAATATCTATTAAGAAAAAACCAACCCCCCAAGGTCATGTGTTACTGTGAGAATTTAGTGCATGAAGAAGACAGGAGGTCATATTGATGCCATAGTTGTTGAATTTTATTTTATTTATTGTTATTTTTTTGTCTTTTGGCCACACCACGCAGCATGTGGGATTTGAATTCCCTGACCAGGGATTGAACCCAAGTCCCCTGCATTGAAAGTGCAGAGTCTTAACCACTAGACCACCAGGGAAGTCCCAATAGTTGCTGAATTATAAAATGAGATCAAATTCCTTTCATCTCAACCTTGCTCATGACTTTACTTTGTTCTAGGATTTTGTCGAGCTTGTGAAAATGCCAGGCACTTTTCCATTTGACTCTTAAAATACTCCTTCAAATGAGGAGCATTTTTTTTCTTTTTATGGATACGGTCTCAGGTCCAGAGAGGTTCAGGCATTTGCCCAAGGTCACACCACTCAGGGCGGAGCCCGGGTTCACATCTAGGCTTATCTTGATCTCCAGGGGAGCCTCTGGACAGGCTCCGAGGGGTGGGGGGAGTCATCCTCTCTGTACACAGTTGCAGTGAGGTGGGGAACTCAGAGCTGCAGACCCAGCGGCTGGCTCATATGCGCTCAGCCGGGGCCCAACGTGGGCACCTGGGAGGGCAGTGGAGCCAAGAGGCAGGGCAGGCCGGGCACCGGCTCGGCTAACACCCGGTGCCTGGTCCGGGCTGCTTCTCCAAGGGCAGCGCTGTGGCTCGCTGGCCTGTGATGTCACCTTGTGAGCGCTTCCTTAGGCTGAGTACAGGAGGTCACGTGAAAGTTGTGTCTCTCTGGAATCAATAATGAGGTGGCTTCCACCCTGTGAGGGGTGTATATGGGGCGATCTGTGGGAAAGATCGGGGTGCATGACAGAGGGGCCGCGAGGAAGCCACGTCTGTGGAGGGTGAGTCACTGAGCAGGGCAGCGGGGGCAGCTACGGCGTTTGGGGTGGTGGGGCGTCTCCTTGCCTCTCTTTGGCAGGAAGAGGATGGAGGGTGGGCTGCGGGTCCTGTGGATGCTGAGAAGGGAAGTTGTACACAAGCCAGCCTGCTGGGGTCCAGTCCCCCCGCCCTTGGAGGTTCCTGGCTGCGGGCACTGTGGAGTACATATTGGGGAGCGAAGCTGGGGCCCTGGAATAGGCTCAAGCCAAGGTGGGTCTCCACGTGAGCAAGGTCTGTGCATTCCACCCCTGCCAAGAGCCCGGAGACCCGCCCTGGGATTTAGACACTTATGTCGGAGATGTTCAGGTCAGGTGTTAACCAGAAAAGCAGTGATTACTAGCAGAGATAAAACAGCAGTCTTCTCCAGCTTTAGATATTTACCTTTTTTTTTCCCTAACCCTCTCTGTCATCCCACTCCCTGGTAGCTCAGATGGTAAAGGATCCATCCACAATGCAGGAGATGCAGGTTTGATCGCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGTCTGGAGAATCCCGTGGACAGAGGAGCCTGGCCAGCTACAGTCTGTGGGGCTGCAGAGTCTGACATGACTGAGCAACTAACACTTTGACTTTCTACCTCCCCCATCCCCAGTATAAAGACAGAGCCAAAAGAAAGACAAAAAGGAGAAAGAACCCCTTACCAGTCCAAATCGCCTATAAGGAGGGAAAGAGATAATTTTGCATAGTATATGGGGTTGGGATTGTAAATTGAGCTGAACAGTGATTGTAAAGCTATCAATTTTTCCCTTGGGGATAGGGAAGAAGGATTTTGATTAGCAGAGTTGTAGACCATAGTTGCAAGAAATAAAATCATCTCTTCTTTTCTGGTTGTACCAACAAGTTCAGATTCTTCATGGCACTGGACATAGATGAAGATAGACGGACCATTAACTGATGCCGCAGGCTAGAGTGTGGTCCGGGCCTCCTGCCAGGGGCACCTTCAGTGCTCATTTTCCATCCATCAGATCAGGTCCTGTCATTCAGGTACAGCATGTGCTCGGCTGTAACATTAGACTTCAAGCCCGAGATGGTGACCACCAAGCTGACCTTTAACTTGATAGGAAGATCATCATCGTTGACTGAGTTTCCATGGTTTTGATGTGTTTGGTGATTTAAGATTGGAGGGAAGGAATCTGATTCTTTTTTTTTTTAAACATTCTTGGGCTGTTCACCTCTCAGCCTCACTCAGTCATTTCTTTGGTCGGTCAGCCCGTCAGTAAATCTTCACAGAGTGCCTGCTGTGTGCCAGCCCGAGGCGCAGGGTTCTAGGCCATAAATAGGCATAGGCCATAAATGAGACGAGCCAGCTCCCTTGTGGAGCTCACATCCTCTGCACACTCCAGTGGATCTTCTCTGACATGGATACTAAATCTCCATAATTTTTCAATTAAGCCTGCTCAGAGGCTTTCAGTAGCCCTCTGCTGACATGAATGAAGTCAGAATTTCTTCATCTATTAGCTGGTGTGTGTGTGTTAGTTGCTCAGTCATATCAGCTCTTTGCAAACCCATGGACTGTAGCCCTGTGTCCAGGAATCCTGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGAATGAGTTGCCATTCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCTGGGTCTCCTGCATTGCAGGCATATTCTTTACCATCTGAGCCACCAGGGAAGCCCAGCTTGTGTGTCGAGAACCCTAAAACTTCCCAGCTTCCTCTCTCGCTGCCACCACCAGACTGGAAGCCCGCCAGGCTTCCCTGTCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGTCCAAAGAGTTGGTGATGCCATCCAACCATTTCATCCTTTGTTGTCCCCTTCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCACATGAGTCAGTTATTCCCATCAGGTGGCCAAAGTAATGGAGCTTCAGTTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCGTTTGGGATTGACTGGCTTGATCTCCTTTCAGTCCAAGGGACTCTCAAGAGTCTTTTCCAACACCAGAGTTCAAAAGCATCAATTCTTTGGCACTCAGCTTTCTTTATATTCCAGTTCCCACACTCATGCATGACTACTGGAAAAACCATAGCTTTGACTAGATGGATCTTTGTCAGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGACCTTAGTTTTTCTTCCACAAAACAATTACATCACAAATAACCATGCATCGGTTCTCCACGTCTATAAATTTTTTTCAAGGACATTATATAATTAGAAACATAGAGGATGTGACATTTTGAGGGGTTTTCCCATGATTTGAAAAGTTTTAGGAGCTGAAATGAATAGCTTCTTCTTTGGTTGTGAAATGGAATTCTCACCCTAAAGGACAGGGCACCAAATTAAACTTTTTTTTTTTTTTGGTAATATAAGAGATACTCTCTCTGAATGAATATGCATATAGGTCCAAGATAGCATCTGACTTTTTATTAATTATAAAGCTGTGTTTCCTGCTTTGAGGGGTCAGCTTGTGCCCCATTATCGTGAGAGGTTCTGTAAAATGTGTGCAAACCTTGAGAAAGTACTCTTTGGATGATAGAATAAATATCGCCACCTTCTGTTCATTGTGAGAAGTACCATTGACTTTCAGGAGGTCATGTGTCCTTCCTTTGCTTTTTGAAAGAAGACCCTCGATAAATTCTCCCAGGTCATAGGCAATCAGCTATTAAAAATGTGAACATAGGATCCTTATTATAGGTTAAAAATAATAGTATTTTGTTTTTTATCCACTGCACTGTTTAAAAAGTTATCTCCGTGGTATGCGGTGAGCAGACTTAAGTTGAATTATTCAAGGTGCAGAAATAAACATAAGGTTCATGTAGCACAGTAGGATATGCTACTATATATGCTATGTCATACTGCCTCGTGTCCTATTAACCGCTTTATTTATGAAGCTTGTGGTAAAGAATAAGCCAGCAACTTGGGAAAATAATTATACAAAGCAGTGATATTTTTATAATTGTTCAGTCACCCAGTCATGTCTGACTCTTTGCGACCCCATGGACTGTCAGGCTTTCTTCTCCTTCACCATTTCCCGGAGCTTGTTCAAACTCATGTCCACTGAGTTGGTGATGCCATCCAACCATCTCGACCTCTGTCATCCCCTTCTCCTCCTGTCTTAAACCTTTTCCAGCATCAGGCTCTTTTCTAATGAGTCAGCTCTTCACATCAGGTAGCCAAAGTGCTGGAGCTTCAGCCTCAGCATCAGTCCTTCCAATGACTATTCAGACTGATTTCCTTCAGGACTGACTGGTTTGATCTCCTTGCAGTCCATGTATAATAGCACAATTTCAAAAGCAAAATGTCTTTAGGTAATTTTAGAAAAGTTTTCCCCTTAAGATATTTTAAAATATCCTAATATGTTGATGTATGACAGAAACCCACAAAATTCTATAAAGCAATTATCCTTCAATTAAAAAAATTAAAAAACATTTAAGGCACGAATATAAGTTATCTTTAAAATAATATTACTTTAATATTTTTTTTTCTTAATTAAGACTAAACCCTTTATTCTCACAGCATGCCTGGGGGAAAAGGGATGCTCTTTTTGTAAATTGGAGACAACGTGGCCAGGGGAGTTGTGCCCCAGCCGATGTCACGTGAGCCGACTCACAGAGAGCAAAGCGAGGAGTCTGCCAGCCCGAGCCCCTGGTGGCAGGGACCTGCCTCTGCTGTTTTATTTTTCATTTCTCATACATTTTGTTTCTGTTATTTAATTTATAAACTTAGTATGTCTGGTTTGTAACAAAGACCAGAGGAGCGTACAGAGCGGTATTGATGGGCGCCCCAGCCACGTGACACGTCTTTCTCCTGTGACAGCTGCTAAATCAGCGTAGTTTTCTGTTCATCTGTATCCTGCTGATTCAGCACGCATAAACATAACCACACGTCTGTAGCTCGGTTCCTTTTACGAAAAGTGGGATACTTGTATGGACGTTATTCTGGAGCTTGCTTTTCTCACTTCACGTGTCATGTGACACTCCCAGTCTTCCCTCCTTCAGCTCCCCTCTTTTCTCTCTCTCCTCTCCCTCCCCCCAATACCTGTACATTTCCACGTGTGCCTGTTCAGTCAGTCTGACTCCTTGCGACCCCATGGACTGTAGCCCGCCAGGTTCCTCTGTCCATGGGATTCTGCAGCCAAGAATACTGGAGTGGATTATCATTTCCTCCTCCAGGGGATCTTCAAACCCAGGGATTGAACCTGACCGAGTCTCTTGTGTCTCCTGCATCGGGAGGTGGATTCTTTAATGCTGCCACCTGAGATGCCCATACGTCTCTATTTCTGTCTCTATCATTATCTCTGTATCCCTTGATCCTATTAGTAGTCCAGGGTCTGAGTATATCATAATTCGTCTAGTCATCGCCCTATGGAGATACTCATAGGCTTTCAGTTTTTTTAATATCAATTATTTTTTTTTTAAAGGTTGCAAACACTTTTGGATATCCATCTTTGTGTGCTGGTATTTTAAATAGTGTCAGAGTCTCACAAATAGGAGATCTGGGTCAAAGATTATCTATGTTTTTAACTTAACTTTGCTTTATAAACTTTGATTTTTGTAAAGTATTAATATCCTCCCAATACTGCATTGTGGCCCCAAAACTGATACTTTTCTGGTGGCAAGTTCTCTGCCTGGGCTTTAGCCCTCCTGCCGTTTGTGGGCAGAGGGAGAGAACGGTCAGCGAATATAGATGTCTAGGATGTGATGGCCCACTTAATTGACTGGCAAGAATGGAGTGTTAGCAATAATGCATTCATTCTAGAAATCTGTGTGTTTCTCAGCTAAGGCAGGACTTGTCCCCTTCTTGACCTTAGTTACACAGGAGTACGGCATAAGTTTACATCATGAATTTCTTCAAAGTCCATTACCGTTGAACCCTGTTTGCACTAAGAGCTGCCACTTCTTATGTATGCAGTTGTGGTAATGAATGTGATTTTAGAAAGCCCTCTCTGGAGATTGAAATAGGGTGGCTGGAGGAAGTGTCTCTGGAGATGTAGCACCCACTGGTCCTCTCTCCCCCTTAAGATTGAATTGGGTATCTGCGAGATTCCCCTAAGCAAATTAGAATGACGTCACCCTTCCTCTACACTGATGTGTTTCTTGGCATTCTAATACTAGAAGATCTAATCATTTCACTTAAGAGCTCTATGTTGCCAACTGGATCTGCCAGTATTCTTCTGCCAGCCAAGGCTGTCACGTTTGGTGTTAAATCAGGACAGCTTGGCTTTACGGAATCCCACCCTGGGAGCCGCAGAAGGCATCTCCAGATGGGCTTATCTCTAGGATGCTTCCCAGCTCAGAAAATGTTCCCACATCGACAAACAGATGTTGTTCAATGTAGGCTCAGCCCAGGTGTCCGTAGACACCCAGCCCAGCACAGTGGTCCTGGGATCGAACGCATGTTTCTGCATGCCGTGTTGAATGTTCTTATGGATAGCCGTGACATGTTGTGATTGTTCCATGAATATCCTTGGTGACTGTTCTGTTTTGCTGCCCACTGCAG
Seq C2 exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAACGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGGATAGAGAACATCCATGTCATGAGGAACAGTCTGCAGAAAATGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372:ENSBTAT00000055365:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]