DreINT0098749 @ danRer10
Intron Retention
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30063186-30063529:+
Coord C1 exon
chr14:30063186-30063320
Coord A exon
chr14:30063321-30063396
Coord C2 exon
chr14:30063397-30063529
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AGAATCCTGTGTATTTCCAGCTA
3' ss Score
5.51
Exon sequences
Seq C1 exon
GCCACGATATGTCGCAGCAGTCAGCCTCTTTCTGGCTTCAGTGCTCGTTGCCTGGAGGATGAGCAAATGCTGCAGGCCATCATGAAGTCTAATCCTGGCAGCAGATTCATGTATGTTGTGGACACCAGACCCAAG
Seq A exon
GTCAGTTCGCTTAATAGAAATATCAATAATGCATATCAAAAAAGACACCATATATGAGAATCCTGTGTATTTCCAG
Seq C2 exon
CTAAATGCTATGGCGAACCGAGCTGCAGGCAAAGGCTATGAAAATGAGGACAACTACTGCAACATTAAATTCCAGTTTATCGGCATTGAAAACATCCACGTGATGAGAAACAGTCAGCAGAAACTCATAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101:ENSDART00000053925:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGCAGGCCATCATGAA
R:
ACGTGGATGTTTTCAATGCCG
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]