BtaINT0096164 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101270230-101277666:+
Coord C1 exon
chrX:101270230-101270339
Coord A exon
chrX:101270340-101277540
Coord C2 exon
chrX:101277541-101277666
Length
7201 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTGCCTCTTGTCTTTACAGGCA
3' ss Score
11.96
Exon sequences
Seq C1 exon
TTTGTGAATTGAAAACTCCAACAATGAGTGAATTTCTTAGCGGCCTGGAGAGCTCAGGGTGGTTGAGACACATTAAAGCTATTATGGATGCTGGAATTTTCATTGCAAAG
Seq A exon
GTAATAATCAGGACTTTTAAGAACTTGCACTGACTTAATTATGGGATCTCTTAAAGTAGCAGTGTATCATGGAAAGAATATAAGAAAAAGACACCTGATTTCTAGATTTAGGTCTACCACTAATTTAATGTGTGCCCTTGGCAAATCTCTTTCCTTCTCTAAGTTTCATCCTCTGTAAAGCAAGGTGGTTAGACTAGAATCTAATGACATAACTTTTTTTGGGGGGGGGTACTGAGCTCTTTGACAATATCATTGACCCTCTCCCCTGGAAAAATGCACATATAGCTATGCATACAGAATATAGGCCTTAATTTCAGAGAGTATACAGTATATCCCTGGTTAAAAACTTAAATAATATCTTAAATAATAACTTAAATAATATCTCATGGTCCTTCCAACTCAAATACTCTGATGTATTTTTGTGTTGATTCTAAGGTACCAAGTGGAAGTAAGACTGGGTATAAAATAAATGCAGTTGGTTTCTATGGGTTTTCAGAGCTCTGAGTATAAAGCTGACCTTTCTGATGTTTTTGTATAGGTCTGCCTCTGAATACAGTCTAAGTAGACTTCATCACTCATTTATGCTGAGTCACTTACTTTCTGACTTTCAGAACCCTGGCTTCTGTATCATTTATTAGGTGATGTTAAAAAAAGAAGAAATTTGGAGTGTACGTTTTCTCATTTTGAAATTTTGTTTATATATTCCTACATGAGAACTTCCTCTCTTCACCCCACCCCAGTGATTTGTTAGAAGTGAAGAAAAGGAGAGAATCACTTTCACCACTCTTTTGCCATTTTCTCAGTTGAAGATGAGATTTATAGCCTCTGCCTTAAAAGGTTTTTAAAAGAATGTGTGTATTTAACTATCTTAAATATCTAGCCCTAATATTTTTCAATTTCCTAGTCTTATTGCTTACATTTTTCATTATAATATATTATTAGTGCTTACTGTGTGACCCCCGCCCAGGTCATTTCAAACCCATTATTCTAGCCGCTTACTGTGTGACCCCCACCCAGGTCATTTCAAACCCATTATTCTAGCCATTCTTTATACTGTTCCTTTTTTGCATGTACTATACTCATACATTTGTATTTCCTTTCTGAAACTGACTTCATGAGACCAAAGAGAGTGAGAATGGAGAAGAGGAATAGATTTGGTAGATAGTACAACCTCATAAACATTTGTGATTTAAAATGAATGGGTGAAAAAAAATAGGCTTGCATTTGTACAGTTATCCTGTGTTTCCCATCTCCATAACACCTATATATCCCCAGCTTGAAAAAGTCAGCCTTGAATTTTCTCTCTTCCCCTCTGTCTGGTAATTGCCTCATCCTGTCAGCTATCCTCAAGTGTTTCTCAAATCTATCCTTTCTTTCCAGCCTCTGCCTTAAGTACTATAATAACTTTCTGACTGGTTTACTTGTCCCTAATAGTTGCTCCCCAGTTTGGCCACCAAATTGATTCTAAAGTCATCTTTCTTGAGAAAATATGATAATGTCACTTTAAACTCAAAATCCTGCAATGACTCCCCATTGCCCATAAGACCCTGGCAATCATGAAATCTTGTTCTCAAAAACACTATAGTATCCCTCCCTCTCTCTTTGTCTCTCGTTATCTTTATTTATGTTTCTCATTATAAAAGTTATACATGTACATTGTAGAAGTAAACAATTCTAAGTATATAACATAAAATGTATATATTCCCTGTAGTTTGCCCCCACAACATATACATCACTATTAATAGTTTAATGTATGCCTCTAGATCAGCACTATTTGAACTTCCTGTGTTGATGGCTTCCCTTTTGGCCCAGAAGATAAAGAATCTGCCTGCATAGCAGGAGACCTGTGTTCAATCCCTGGGTTGAGAAGATCCCCTGGAGCAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAATATTCCATGGAAAGAGGAGCCTGGAGTCATAAAGAGTAGGACATGACTGAGTGAGAGGGTGCTTCCCAATTCATGTGATGTTGGAAATGTTCTGGATCTGTACTAATACAATAGCCACTAGCCACATGTGGGAGTTGTATACTTGAAATGTGGCTAGTGAGAGTAAGGAATTTAAAATTTTATTCAATTTTGATCAGTTTAAATTTAAATAGCCACTTGCGGCTAGTGACTACCATATGGCACAGTACAGGTCTAGATTTTCAGCATATATAATTATATATAGGGCTTCTCTGATATCTCACTTGGTAAAGAATTATAACACTATATATATTATTGTTACTACTTTGTAAAAGTAAGATTATGTTGTGCATATTTTTCTGCAACTAACTTTTTATACTTAATATATGATAAATATTTTCTAGGTCAGTTCAATCAGTACTACCTCATTTTTTTTCAGTGACTATATAATATTCCATTAAGTGAATATTTTAATTTCATTTATTAGGTGATGTTAATAAAAGAATTTGGAGTGTACATTTTCTCATTTTGAAATTTTGTTTATATATTCCTACATGAGAACATGCTCTCTTCACCACACCCCTATTATTTGGTAGAAGTGAAGAAAGGAGAGAATCACTTTTCACCTCTCTTCTGCCATTTTCTCAGTTGGAGATGAGATTTATAGCCTCTGGCTTAAAATATTGGTCCCTGTTAATAGACAATTCAGTTATTCACATTTTTTACAAATGCAGACATTGTTGCATCAAATAGCCTTGAACATATTTCTTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTACTCTATACCTCTCCTGCTGCTGCTGCTGCTGCTGTGTTGGTTCAGTCATGTCCGAGTCTGTGCGAGCCCATAGATGGCAGCTCACCAGGCTCCCCCGTCCCTGACACTTCTCCAGGCAAGAACACTGGAGTGGGTTGGCATTTCCTTCTCCAACGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCCTGTCCGACTCTTCGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGATACCTCTCCTAGTGGCTCTCTTTTCTCCTTTAAGTACTTTGGAAACCATTTTAGGTAGGTGACTTCCTTTCCATCCTGATTCTTCCTCTCAATCCTGGGAGATTTGAATGTCCATGTACAAACCTATAAAACACTCAGCACTGATATAGTTCTTTGAACTTTTATACCCCAGTTCTCACACTTTTACTCCAGCTAACCTGGTTTTTCTGTCCCATGAAGACCTCTGCACTTTTAACTCCATTTTTTCCACCTTTTCCTACTTTCTTCCCTATGGAGCCAAGACCTAGTTGTGTAGCACTTCATCCATTCCACCTTGCCTCTTTATCCTTCCATTCTACCTACCCTGATAATCTCATTCATTCTCTGCTTTTATATCCTGACTACTAAACAATGCTACAAAGGAGTAAATCCCATAGCCATGTTAACTGGTATTGAGTTTATGGTGTATAACATTGGTTGGGTCCCAGCCCTGTTCCACCAAGCAAGATATTTCTAATATGTATTTTACTTTCAAGCTGGCTATAGCACTGTTACTTTCCTCTCTATAAGCACATATTCAGACTTGTCTTCATCTTTATAGAAAAATAAAGGTAATCTCTCATCTTCCCACGCAACTATTTTTTCTCCTTCCTTGCTATCTTAGAGGAAATGGTGCCTCATACCTATATTCTTAATTCCATCCCCTCCTTCTTCAAGGAAACTTTTCCCCCTATATTTTCTTTTTCCCACCTCTCTTACATTTTTAACCTTTTCCTTTCACTGGCTTCATCCCTCAGAAATATGCTCGGCACTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAGGGGGAGCTACACTGGATCTTTGTTGCTGTGAGGATTTTCTCTAGTTGCAGTGAGAGGGGACTACTCTCTAGTTGCAGTGCACAGGCTTCTCATTGTGGTGACTTCTTTTGTGCAGAACAGGCTCTAGGGCACACACACAGGCTTCAGTAGTTGTGAAACACAGGCTTTAATGCCCCACAGCATGTGGAATCTTCCCAGACCAGGGATTGAACCCATGTCCTCTGCATTGACAGGTGGATTCTTAACCACTCGGCCACCAGGGAAGTAAACTTAATACTTTCTTATTCCTAAGGAAAGAATTTTTCTTATCTTCTTATATTTACTGTTCTCTTTCCTCTTGCTTAGAGCTTTCTTGAAAGTAATTGACCTTCCTTATCTACACTTCCTCACATCCCTTCATTTTTCAGTTCACTATAATCCAGTTTCCTTCCATACCATTAGTACTCTTCTTGCTGAGGTCTCTGCTGCTACGGAGAAGGCAATGACACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGAGGTCGCTAAGAGTCAGACATGACTGAGCGACTTCACTTTCACTTTTTACTTTCTTGCTGAGGTCTCAAATGACCCCTAACTTGTCGATTTCAAGGTCACTCTTTAACCTTTGTTCTGTTTTCACCACTCTGCTACATTTGACATTGTTATCCCCATTCTCTTTGAACCATTTTTGTAGTTCTGGCCTTAATCCAACTACTATTTCCCATTTCTTTTTCTACCTTTCAGGCTTTTTCACAAGCTGACTCCTTTAATAGCTCTCTCCTTCCTCTACTTTCCCCTTAAAAGTTACTGCTTTTTAAGGTCTTTCCTTTTCTCACTGTGGTCTCTGCATGGACAGCACCAGTCATGCAGTTTCACTTATGATCTCTACTCATATTGTGGTCACATCTATACTCTGGCTCAGTTTCCTCATTCTCCTAAACTACAGACCCACATATACAGCTGTCCACTGAATGCCCCATTGAATATCCCCCAACTACCTCAGACTCTCCATGGCCTCAAATTAAATCTTACTTACTCTGAACACTAACTAAAACTTGTTTCTTCCTCTGTGTTTATTGTTCAGGCTAATGGTATTGTCATCCACTTAGTCATTACTAAATGAAACATTTAAGAGTCATTTTTGACTTTTCCCTCTCCTTTATCCCACATCTCTTCTCACACTATGTCCTATTAGATTTTTATTCTTAACATCTCTCTTCTCCTTTTCAGCCCCACTGCTACCACCTTTATTCAGGTGCTTATTACCTTTCACAATTTTGGTGGCTCTTTGACTGATCTTTCTAAATCCAAATTTATGCCCTCTTATTCTCCTTATTGTCACCATAGTGAGTACATCTGATCATGGTACTTCTCTGCTTTTAAAACTCCAGTGACTCCCTATTGCTACCAGATAAAGTGCACACTTGTCAATCTGAACCTTGCCCTCCTGGCCAGACTTGTCTCTCCTCACTCCCTCACTTCTAGTGTAGCCTCAACCACCAAGCTAGTTAATAATTCCTCACCTATGCCATGCCTCCTTGCCTTTGTAAATATTGTCAGATTATGCCCCTTGCCTGGAATATCCATTCCTCCTGGTCTATTGACAAATGTCTATTCATCTGACAAGGCCGACTTTAGTTGTCTCCTCTTCTTTAGTTATTATATGCCTTTGTTGTATCTGATGTTACCTTTCATTGTTTTAGTTATCATTGGTTTATAGTCATTCATTTAAATGTTTGTCTTTTTTGTATCCCCAGTGCACACTATAATGCATCTTGTATAGTCACTCAGTAGTTATTGGCTAGGTGAGTAGATGAATGAATGTGTGAATAAATGCCCTTCTTCCTCACCTGAGAAAATCCTACATTTTCTTCAAGGCTCAAGCTTCCCTGGCTCCTACAAAAGGCTACATTACCCTATAGCATCAGTTTTTCCACTGCATTGTATTTATTTACCTTTGGTAATCCTGAATAGTTTGCTCATTGAAGGCAGAAACTGAGTCTCATCTTTGTATCTCTAATCCTTAGCATATACATGACATAGAGGGATACATAATTAAGTGCTAGAATGATTAAGTGAATGCTCAATAGCTCCCATTGCCAAAATTGCCCAGGTTGAGGAACTGCCCATATTTTTACATCATTTTGATTGTATAGAAACTTACCTAAGACAGGTAAACCTCTCCACGTTAAGTTAAAAGTATTTATATTAGTAAGACTAAATGGCTGAAGATTCCGAAGCAAATTACTATCAGGTCTGGGACTGAGATGCAGAACTGTCTTGTTTTTGAGCATGAATTCTTCCTCTTGCCCACTCCTTGCTATAATAATTGATCCATGTCTTCTTCAGAAGTTTTATAAATGTAGATCTTCTTTTGTTTTTATTTTTACCCATATAATGTGCTGGTTTTGGTTTTCTTTTCCTATTAGGTAAGCTCACCTTCTGTTACATTTCTTTATTTTCTTTTTCATTCCCCATGTGTGCATGCTCAGTTGTGTCTTATTCTTTGCAACCCTATGGACTATATAGCCTATCAGGCTCCTCTGATTCTCCAGGCAATCCTATGGACAGAGAATAGTGGAGTGGGTTGCCATTTCCTTTTCCAGGGTCATTCCTCATATAGGATACCAATATTACGAGAAGAAATTAATGTAGCCCAGTTAAGACCAAGTTCTCTGCTGTATTGATGGTAACCATATATAATTAACCCAGCATGCTATGTAAAAGTTGTTTATGGTACTTTTTGCCTCTTGTCTTTACAG
Seq C2 exon
GCAGTGAAGGTAGAAAAGACCAATGTCTTAGTCCATTGTTCTGATGGGTGGGACCGCACAGCACAAGTTTGCTCTGTGGCCAGCATCCTCCTAGATCCATTTTATAGGACATTCAAAGGACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705:ENSBTAT00000050192:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.4=100)
A:
NA
C2:
PF066029=Myotub-related=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]