GgaINT0073694 @ galGal3
Intron Retention
Gene
ENSGALG00000007590 | MTMR8
Description
NA
Coordinates
chr4:11727354-11728671:+
Coord C1 exon
chr4:11727354-11727463
Coord A exon
chr4:11727464-11728545
Coord C2 exon
chr4:11728546-11728671
Length
1082 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTGTCTGCTCTCCTTCACAGGCT
3' ss Score
11.73
Exon sequences
Seq C1 exon
TCTGCGAAACAAAGTCTCCATCAATGAGTGATTTCCTTACTGGGCTGGAGAACTCAGGTTGGTTGCGGCACATAAAGGCTGTCGTGGATGCAAGTGTCTTTCTCGCAAAG
Seq A exon
GTAAACTTGTATACCAAGCTTCAGCTGAAAAACCTGTGGTTAGAGCACATCAAGTCAGTAGCCCAGCTCACTCCCTCCCGGTTTCCTCATGGCACTAGAGGAAATGCCACTGGGATTGAGAGAGAACCATTTGTTCTAATGCAATCAGTAGGACTATCTGGACTTTTTGGCAACCCTGCCCATGATAGGGGGTTTGAAACTAGATGATCTTTCAGGTCCTTCTCAACCCAAGCCATTCTGTGATTCTGTGACTTCCTTAAAACTCGCTGAAATGAGTAGAATCACAGCATGTGGATAAATGACATTTATAAATGCCTCTGTACCCCATAGCGTGTTTAGTAGTGCAAACAATTTGTAACCTTGTGCTCCTAATGCAGCATGCTCACTAATTGTTGGACTGTTGTGCTTTAATTGAGGGATTGTCTCGACCGTCCTGCTTCCTGCTGAGAGGCAGCAATCACAGATCTGTATTTTTCAGTTCAGTCCTCATTTCTGCAGATTTTTTTTGAAGAGTGTGAGTTTGCAGGACAGGAAGGAGAAAAGTCTATAAAGCACATTGCTCTTCAGTAATAGTAAATGGAACGCAGACAACAAGCGGCAAGAGTGGTCACTTCTGTAAATGTTGTCTTTTCTCTTAAAACTTTTCTGTGCAAGAAGTTATTTTCTGCCAGCAGTGCAGAAATGAGAAGAAGGTGATCTATAGGAGAGGAAGTTAGATTGAGCTCTTCTATTTTTTTTTCTTGAAGCTTCCAGTTATTCTTTACTCATCTACCAAATCCTCCCTCAAAGGAAAGGACTGAAAATTCATGGCATTTCAGAAGATGAAGTGTTTTCATGTCAGAGGATCTTTGTTTCTTGTCAATCTCTGTTGCTGACAAGGCATGCTAAAGCATTTTATTCTAGTTGGGACTGATGGCTATACGCCCAGAAATGGTGTTTTTTTTCTATGGTTGAGATTAGAAATGACAAATTTTTCCCTTGGGTTTGAGAACAATCTGATAAATGCAGATGAAGGGATAGCATTTAATTACAGTAACCAAACTAGAAAGCTGCTAAACCGTTCTGTCTGCTCTCCTTCACAG
Seq C2 exon
GCTGTGAAAGATGAAAAGGCCAGTGTGTTGGTGCACTGCTCTGATGGGTGGGACCGCACAGCACAGGTCTGCTCCCTGGCTAGCCTCCTTTTAGATCCGTTTTATAGGACTTTTAAAGGCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590:ENSGALT00000012271:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGAAACAAAGTCTCCATCA
R:
AGCCTTTAAAAGTCCTATAAAACGGA
Band lengths:
231-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]