RnoINT0095404 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40587816-40588511:+
Coord C1 exon
chr15:40587816-40587985
Coord A exon
chr15:40587986-40588385
Coord C2 exon
chr15:40588386-40588511
Length
400 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AGTGTGTCGTTTCCCCCCAGGCA
3' ss Score
9.72
Exon sequences
Seq C1 exon
TGAATGGCAGCAAGGGGCTTTCTGTCAACGATTTCTACTCTGGTTTGGAGAGTTCAGGATGGCTTCGTCATATCAAGGCTGTTTTGGATGCTGCAATCTTCTTAGCCAAAGTAACTATCTCTTAATGGTTCAGGTTTGTAACCAGTGGGGAAGGAATGGACTTAGCCTTG
Seq A exon
GTAAGTCTTGGTTCTGCTCTGACAACTTTTATTGTTCTTTGCCTCTTTAATGGGGTTCACTTCAGTTGGAAGTGGTGCTTAATATGGAGATTTACAATCCCCAACTACTTACTTTTTTTCTTTTTTTTCTTTTTTTCGGAGCAGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCCCCAACTACTTACAAACAACATTTTTGTTTGCTTGTTTTGTTTCTGTTGTTTGTCTTGATTGTGGCAACAGTCTCATCGCGGGGCCAGCTCTTATGATGTGTATCTTCTGGCCTGGGTTTTAGTATGTAACCTTACTGATTTATATAAGAGGAATTTTGCAAGAATCTAAGTGTGTCGTTTCCCCCCAG
Seq C2 exon
GCAATAGTGGTTGAAAATGCAAGTGTGCTGGTACACTGTTCGGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCTTGGTTCGCTCTTGTTGGATTCCTACTACAGGACAATGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(18.0=95.2)
A:
NA
C2:
PF066029=Myotub-related=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGCAGCAAGGGGC
R:
TGAATCCTTTCATTGTCCTGTAGT
Band lengths:
294-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]