GgaINT0115696 @ galGal3
Intron Retention
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181402671-181404400:+
Coord C1 exon
chr1:181402671-181402780
Coord A exon
chr1:181402781-181404274
Coord C2 exon
chr1:181404275-181404400
Length
1494 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AGGAAACAAATGTTTTGCAGGCA
3' ss Score
3.6
Exon sequences
Seq C1 exon
TCAGTGGCACGAAGGGTTTGTCTGTCAATGACTTCTTGTCTGGTTTGGAGAATTCTGGATGGCTGCGTCATATCAAAGCTGTGTTGGATGCTGCTGTCTTCCTAGTCAAG
Seq A exon
GTACTTTGTATGCTGCTTTTGTTTGAGGGCAGGTTGACATGCTATAATACTGTGTAAAATATAAATCTCTGCAAATACAATTTCTTTTCTTCACAGAGAGGGAATGGCTTGAAATAGCTTGCTTGCTTGCTTTGAATGGCCTGGGTTGAAAAGGACCTCAAAGGTCACCTAGTTTCACACCCCTGTTATGTGCAGGGTTGCCAACCACCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGCGGCATCCACAACCTCCTTGGGCAACCTGTTCCAGTGCGTCACCACCCTCTGTGTGGAAAAACTTCCTCCTAATATCTAACTTAGACCTCCCCTGTCTCAGTTTAAAACCATTCCCTCTTGTCCTGTCACTATCCACCCTTGTAAACAGGCGTTCCCCCTCCAGTTTATATACTCCCTTCATGTATTGGAAGGCCACAATGAGGTCTTCCCAAAGCCTACTCTTCTCCAAGTTAAACAAGCCCAGTTCCCTCAAACTTTCTTCATAGGAGAGGTGCTCCAGCCCTCTCATCATCTTAGTGGCCTCCTCTGGACTCGTTCCAGGAGCTCTGCAACATTCTTGTGCTGGGGGCCCCAGACCTTGACGCAGTACTCCAGATAAATAATGCATCTGATATGCTGTTTTAAATCCCCCATGATTCTTTATGGTTGGAGATTGTAAATATGCTAGATAATATGTAGGGATTTTTTTTAAGGCTGTTTGGTCACCATAATGGGAGATGAAGGGATTCTTTCAGGTACTTATGTAACCAATTTGAAGGTAGAACAAACTTTTACTGTACTTGGAATAATAGGACTTATGGGGGGGTAATTGCAGAGAAGACGAATTGGTAATGCTGACTTCGCTTAGAAAGGAAATTACACTGATTGCAAAGAATTTAAAGGAATGCTTGTCTATGTCATGGAGGGCTTGATGTGAAGGGAAGGAAAAAAAAGACAAGCTCTTTTTTCCTACATGAAGTAGCAAAAGATACCTTAATTAAAAGTGGGTGCTTCTCTTAAAGATCAGATGATCCTAACGTATTTGGGTTAACAAGATTTAAATTCTTAGCTGAAGCTACTGACTGCTTCCTAGTCCTTGACTTTTTGTTTGTTTCAAAATTGTCTCCTATTTAACGTGTAGGGAACTTCTTTCTTAATATTCATTGTGAGGATCTTTCTAGTTTTATAAGGGGTGGAAAGAGAAATGGGAACAGCTGTAGAAGTTCCTGTTACCTTTATTAAGGAAGATGGTAGATTTCCTTTCTTTAGTAGGGAGTTTGCTGCAGTTCAGTGCAGAGATCCCTAGATTTCTGGTGGCAGCTAGTAACTCCTCCCATAATATTTTTCTTGCAGTGTGATATAAAATAGGCAATGCTGCGAGTTTTGAATAAATACAGCTTTTATATGTATTTGTTTGCATTGTTCAGACACAACAACAGAGCATTCACTAAGGAAACAAATGTTTTGCAG
Seq C2 exon
GCAATAGCAGTTGAGAGCGCGAGTGTGTTGGTGCACTGCTCTGATGGCTGGGATAGGACGTCCCAAGTTTGTTCTCTTGGAGCTCTCTTGTTAGATTCCTATTACAGAACAATCAAGGGGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112:ENSGALT00000027648:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAAGGGTTTGTCTGTCA
R:
CATGAACCCCTTGATTGTTCTGT
Band lengths:
230-1724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]