HsaINT0106301 @ hg38
Intron Retention
Gene
ENSG00000139505 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr13:25257196-25257845:-
Coord C1 exon
chr13:25257736-25257845
Coord A exon
chr13:25257322-25257735
Coord C2 exon
chr13:25257196-25257321
Length
414 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATA
5' ss Score
0.92
3' ss Seq
TATGTGATCTTTCTTTTCAGGCA
3' ss Score
11.17
Exon sequences
Seq C1 exon
TCAATGGCACTAAAGGGCTTTCTGTCAATGATTTCTACTCCGGTTTGGAGAGCTCGGGATGGCTTCGCCATATCAAAGCTGTTATGGATGCTGCAATCTTCTTGGCCAAA
Seq A exon
GTAATACTTTATCTTTCATATTTGGTCTTGGGGTCTATAATGATTGGGAAGGAGTAGATGTATTCTGTTGGGGGCTGGTATCTATTCATCAGATAACTTTTATTATTTTTTACCTCTTTAATGAGCTTCACTTTATTTTCAGCCTTAAAAATATCATGTAGCACTTAATGTAGAAACTTAAAAAGATGCTCCTAAATACTTTGAAGTGGCATTTTTTCTTTGTTTTTTTTTTGTTTGTTTGCTTGTGTTTTTGTTGTTACCATATTTTGTTGTGTATTTTGGAAATTATGCTGTGACATTATCATTGCAGGCATAGCACTTCCTTGTAACACAATACCTGCTAGTATGATTTTCAAGTAGAATTTATTGGTTTACCTTAAAGTACGCTAGAATGTATGTGATCTTTCTTTTCAG
Seq C2 exon
GCAATAACAGTTGAAAATGCAAGTGTGTTGGTGCATTGTTCCGATGGTTGGGATAGGACTTCCCAGGTTTGTTCCCTGGGTTCTCTTTTATTGGATTCCTACTACAGGACAATCAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505:ENST00000381801:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACTAAAGGGCTTTCTGT
R:
CATGAATCCTTTGATTGTCCTGT
Band lengths:
232-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development