BtaINT0096140 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34189690-34190328:+
Coord C1 exon
chr12:34189690-34189799
Coord A exon
chr12:34189800-34190202
Coord C2 exon
chr12:34190203-34190328
Length
403 bp
Sequences
Splice sites
5' ss Seq
AAAGTAACG
5' ss Score
2.88
3' ss Seq
TGTGTGGTCTGTCTTTTCAGGCA
3' ss Score
10.35
Exon sequences
Seq C1 exon
TCAACGGTACCAAAGGGCTTTCCGTCAACGATTTCTACTCTGGTCTGGAAAGCTCAGGATGGCTTCGTCACATCAAAGCTGTGATGGATGCTGCAATCTTCTTAGCCAAA
Seq A exon
GTAACGCTTCATCACTCACATTCGATCATGGGCTTTCCGTGGTTGGGAAGGAACGGGTTCATTCTGTGGGGTGCTCATATCCATCACAGTCAGATCGCTGTTACTACATTCTATCTCTGTAGTGAGATTTACTTTAATTGGAGCTTTAAAAATATCATATAGCAGTTAATGTAGGAGCTTCAAAAGAAATTCCCCAGCACTTTGAAATGACATTCTGTCTGTGTTTTTTTTGTTTTGTGTTTTGTCTTGTATTTTGGAGAATATGCTCTGACAGCATTGTCACTGCAGCCCTAGCTCTTCTTCATAATGCATACCTGCTAATCTGGTTTTTGAGTAAGTAGAACTTACTGACTTACCTAAAATGTGTCCTGGTAGAATGGAAGTGTGTGGTCTGTCTTTTCAG
Seq C2 exon
GCAATCGCGGCTGAGAGTGCGAGCGTGCTGGTGCACTGCTCTGACGGCTGGGACAGGACCTCACAGGTCTGCTCCCTGGGCTCTCTCCTGCTGGATCCCTACTACAGGACGATCAGAGGGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGTACCAAAGGGCTTTCC
R:
TGAACCCTCTGATCGTCCTGT
Band lengths:
232-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development